View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6033_low_26 (Length: 277)
Name: NF6033_low_26
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 27001613 - 27001367
Alignment:
| Q |
18 |
atgaagtttattaagaataagaataacgacagcaatgcaaatcagaaacactattatcagagcttatcccttcacatcaaggacatttgtttagtttctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27001613 |
atgaagtttattaagaataagaataacgacaacaatgcaaatcagaaacactattatcagagcttatcccttcacatcaaggacatttgtttagtttctt |
27001514 |
T |
|
| Q |
118 |
tttgtacccnnnnnnnttatgtttcttaaaagagaatatcatcaatcttatcacaacaacattaccgaaatttggcacgttccgtgaagaataatcgtat |
217 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27001513 |
tttgtacccaaaaacattgtgtttcttaaaagagaatatcatcaatcttatcacaacaacattaccgaaatttggcacgttccgtgaagaataatcgtat |
27001414 |
T |
|
| Q |
218 |
atttcacatcatgatatcattaggatcattcatcttaataaattatg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27001413 |
atttcacatcatgatatcattaggatcattcatcttaataaattatg |
27001367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University