View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_27 (Length: 274)
Name: NF6033_low_27
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_27 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 14237655 - 14237391
Alignment:
| Q |
10 |
aacaatatttgaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggtgtgtttgcgnnnnnnnatttgttga |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
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| T |
14237655 |
aacaatgtttgaggggacagtgagaactaatctggacccccttgaagagtacaccgatgaacaaatatgggaggtgtgtttgtgtttttttatttgttga |
14237556 |
T |
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| Q |
110 |
aaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14237555 |
aaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttgg |
14237456 |
T |
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| Q |
210 |
ataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttt |
274 |
Q |
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| T |
14237455 |
ataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttt |
14237391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 14377607 - 14377866
Alignment:
| Q |
10 |
aacaatatttgaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggtgtgtttgcgnnnnnnnatttgttga |
109 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
14377607 |
aacaatgtttgaggggacagtgagaagtaatctggacccccttgaagagtacactgatgaacaaatatgggaggtgtgtttgtgtttttttatttgttga |
14377706 |
T |
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| Q |
110 |
aaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttgg |
209 |
Q |
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| T |
14377707 |
aca---aaatgcaatgacaatgacccttggttttgaacaaaattttagacatgtgattgttcttcaaatactgatttacattctttaaaataggccttgg |
14377803 |
T |
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| Q |
210 |
ataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgt |
272 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14377804 |
ataagtgtcaactgggagatgaagttagaaagaatgaaggaaagcttgactcttcaggtttgt |
14377866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 41435524 - 41435269
Alignment:
| Q |
17 |
tttgaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggtgtgtttgcgnnnnnnnattt-gttgaaaagaa |
115 |
Q |
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| T |
41435524 |
tttgaggggactgtgagaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggtcagctggtttttttattttttgttgaaaa--a |
41435427 |
T |
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| Q |
116 |
aaatgcaataacagtgacacttggttt-tgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataag |
214 |
Q |
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|||||||| |||||| ||||||| || || | ||||| ||| |||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
41435426 |
taatgcaatgacagtggcacttgggttctgtgaaaaatattagacttgtaattgttcttcaaatactgatttacattctttaaaataggctttggataag |
41435327 |
T |
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| Q |
215 |
tgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgt |
272 |
Q |
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|| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41435326 |
tgtcaactgggagacgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgt |
41435269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 41448735 - 41448486
Alignment:
| Q |
17 |
tttgaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggtgtgtttgcgnnnnnnnatttgttgaaaagaaa |
116 |
Q |
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||||||||||| ||||||| |||||||||||| || |||||||||| |||||||||||||||||||| | | | ||| ||||||| | |
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| T |
41448735 |
tttgaggggactgtgagaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggtcagctgttgtttt----ttttttgaaaa--at |
41448642 |
T |
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| Q |
117 |
aatgcaataacagtgacacttggttt-tgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataagt |
215 |
Q |
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| |||||| |||||| ||||||| || || | ||||| ||| |||||||| |||||||||||||||| ||||| |||| |||| ||||| |||||||||| |
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| T |
41448641 |
attgcaatgacagtggcacttgggttctgtgaaaaatattagacttgtaattgttcttcaaatactgatttaccttctttaaa-taggctttggataagt |
41448543 |
T |
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| Q |
216 |
gccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgt |
272 |
Q |
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| T |
41448542 |
gtcaactgggagatgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgt |
41448486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 41442494 - 41442368
Alignment:
| Q |
146 |
gcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataagtgccaactgggagatgaagttagaaagaaag |
245 |
Q |
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||||||| ||| |||||||| |||||||||||||||| | |||||| | |||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
41442494 |
gcaaaatattagacttgtaattgttcttcaaatactgatctacattttttaaaataggctttggataagtgtcaactgggagaggaagttcgaaagaaag |
41442395 |
T |
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| Q |
246 |
aaggaaagcttgactcttcaggtttgt |
272 |
Q |
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| T |
41442394 |
aaggaaagcttgactcttcaggtttgt |
41442368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 41442611 - 41442547
Alignment:
| Q |
20 |
gaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggt |
84 |
Q |
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|||||||| ||||||| |||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
41442611 |
gaggggactgtgagaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggt |
41442547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 32118373 - 32118119
Alignment:
| Q |
10 |
aacaatatttgaggggacagtgagaactaatctggacccccttgaagagtacagcgatgaacaaatatgggaggtgtgtttgcgnnnnnnnatttgttga |
109 |
Q |
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|||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||| | | ||||||||| | ||||||||| |
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| T |
32118373 |
aacaatgtttgaggggacagtgagaagtaatctgg--ccccttgaagagtacactgattaacaaatatag-atgtgtgtttgtgtttttttatttgttga |
32118277 |
T |
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| Q |
110 |
aaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgt-aaaataggcgttg |
208 |
Q |
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| | | || |||| |||| || ||||||||||| |||| |||| |||||||| ||||||||||||||| ||||| |||| | ||||||||| ||| |
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| T |
32118276 |
aca---agattcaatgacagcgatccttggttttgaacaaattttttgacttgtaattgttcttcaaatactaatttacgttcttttaaaataggccttg |
32118180 |
T |
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| Q |
209 |
gataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtt |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32118179 |
gataagtgtcaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtt |
32118119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 22666881 - 22666819
Alignment:
| Q |
209 |
gataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttg |
271 |
Q |
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|||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||| |
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| T |
22666881 |
gatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttg |
22666819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 22723520 - 22723458
Alignment:
| Q |
209 |
gataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttg |
271 |
Q |
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|||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||| |
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| T |
22723520 |
gatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttg |
22723458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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