View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_3 (Length: 538)
Name: NF6033_low_3
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 38386749 - 38387258
Alignment:
| Q |
1 |
aaaatcccaagtaaaatccgcaggaaatgtttacatagaaacnnnnnnn-ttacaggaaaaccctcacctaacaatatttcagttttttatcgccaattg |
99 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38386749 |
aaaatcccaaggaaaatccgcaggaaatgtttacataaaaacaaaaaaaattacaggaaaaccctcacctaaca---tttcagttttttatcgccaattg |
38386845 |
T |
|
| Q |
100 |
gcatatataaaattcattttgagaattggaatcaaatacatctaaaatgtccactatataatgataaaactaatccaaaatatttattattttggtgtat |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38386846 |
gcatataaaaaattcattttgagaattggaatcaaatacatctaaa-tgtctactatataatgataaaactaatccaaaatatttattattttggtgtat |
38386944 |
T |
|
| Q |
200 |
tctatttgagcaaggagttgagttgctaataacacagtcagtcaagtcttcaataatcacgtcccttttacaacatttcctgcaagataccgatttgaga |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38386945 |
tctatttgagcaaggagttgagttgctaataacacagtcagtcaagtcttcaataatcacgtcccttttacaatatttcctgcaagataccgatttgaga |
38387044 |
T |
|
| Q |
300 |
agatccagtttccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgccttgtaccaacnnn |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38387045 |
agatccagtttccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgccttgtaccaacata |
38387144 |
T |
|
| Q |
400 |
nnnnnnnnnnnnntattcagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatc |
499 |
Q |
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| T |
38387145 |
aaaaaaaa------aaacagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatc |
38387238 |
T |
|
| Q |
500 |
aacgtggaacattaagcatg |
519 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38387239 |
aacgtggaacattaagcatg |
38387258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 195 - 387
Target Start/End: Complemental strand, 42649688 - 42649498
Alignment:
| Q |
195 |
tgtattctatttgagcaaggagttgagttgctaataacacagtcagtcaagtcttcaataatcacgtcccttttacaacatttcctgcaagataccgatt |
294 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42649688 |
tgtattctttttgagcaaggagttgacttgctaataaca--gtcagtcaagtcttcaataatcacgtcccttttacaacatttcctgcaaaataccgatt |
42649591 |
T |
|
| Q |
295 |
tgagaagatccagtttccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgcct |
387 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
42649590 |
tcagatgatccagtttccagaatattaagcatacagctccccaaacatacaattaattgcttctaaggctgttaaaattcagttgagatgcct |
42649498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 414 - 519
Target Start/End: Complemental strand, 42649514 - 42649409
Alignment:
| Q |
414 |
attcagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatcaacgtggaacatta |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42649514 |
attcagttgagatgcctataattgaagaaaatttaagtttcaccatagtgattcatgataagaatgtccaacatgcattatatatcaacgtggaacatta |
42649415 |
T |
|
| Q |
514 |
agcatg |
519 |
Q |
| |
|
|||||| |
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|
| T |
42649414 |
agcatg |
42649409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 24674315 - 24674242
Alignment:
| Q |
118 |
ttgagaattggaatcaaatacatctaaaatgtccactatataatgataaaactaatccaaaatatttattattttg |
193 |
Q |
| |
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||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24674315 |
ttgagaattggaatcgaatacatctaaa-tgcccactatataatgataaaa-taatccaaaatatttattattttg |
24674242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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