View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_30 (Length: 267)
Name: NF6033_low_30
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 10483530 - 10483766
Alignment:
| Q |
14 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
113 |
Q |
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| T |
10483530 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaagcacttagatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
10483629 |
T |
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| Q |
114 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagaaaatgcaagacttaaagaagaaacttttgatcttcgccaaatggt |
213 |
Q |
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| T |
10483630 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagagaatgcaagacttaaggaagaaacttttgatcttcgccaaatggt |
10483729 |
T |
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| Q |
214 |
agctgacatgcaaattggtaactcttttccttgcaac |
250 |
Q |
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| T |
10483730 |
agctgacatgcaaattggtaactcttttccttgcaac |
10483766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 4952142 - 4951906
Alignment:
| Q |
14 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
4952142 |
atatcaaacagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcaca |
4952043 |
T |
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| Q |
114 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagaaaatgcaagacttaaagaagaaacttttgatcttcgccaaatggt |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
4952042 |
accttgttgacaaactaaaccatgtgtctgagtcacatgacacagttgttcaagagaatgcacgacttaaagaagaaacttttgatcttcgtcaaatggt |
4951943 |
T |
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| Q |
214 |
agctgacatgcaaattggtaactcttttccttgcaac |
250 |
Q |
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| T |
4951942 |
agctgacatgcaaattggtaactcttttccttgcaac |
4951906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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