View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_37 (Length: 250)
Name: NF6033_low_37
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34686799 - 34687030
Alignment:
| Q |
1 |
atcaaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaatggtaaaaagaaaagtagagtgaaccggcgagtttattttgaaccggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686799 |
atcaaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaatggtaaaaagaaaagtagagtgaaccggcgagtttattttgaaccggt |
34686898 |
T |
|
| Q |
101 |
tgggttgagtcatatggttatttattggatttccctcaaaacggttaacgaacacgactttcaaataatcgaatatcaaaaccctttccctccaaacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686899 |
tgggttgagtcatatggttatttattggatttccctcaaaacggttaacgaacacgactttcaaataatcgaatatcaaaaccctttccctccaaacacc |
34686998 |
T |
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| Q |
201 |
aacatttcaactaaccgcgccattctccgacc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34686999 |
aacatttcaactaaccgcgccattctccgacc |
34687030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 26984747 - 26984975
Alignment:
| Q |
4 |
aaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaatggtaaaaagaaaagtagagtgaaccggcgagtttattttgaaccggttgg |
103 |
Q |
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| T |
26984747 |
aaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaatggtaaaaagaaaagaagagtgaaccggcgagtttattttgaaccggttgg |
26984846 |
T |
|
| Q |
104 |
gttgagtcatatggttatttattggatttccctcaaaacggttaacgaacacgactttcaaataatcgaatatcaaaaccctttccctccaaacaccaac |
203 |
Q |
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| T |
26984847 |
gttgagtcatatggttatttattggatttccctcaaaacggttaacgaacacgactttcaaataatcgaatataaaaaccctttccctccaaacaccaac |
26984946 |
T |
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| Q |
204 |
atttcaactaaccgcgccattctccgacc |
232 |
Q |
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| T |
26984947 |
aattcaactaaccgcgccattctccgacc |
26984975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 27080602 - 27080502
Alignment:
| Q |
5 |
aaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaa--tggtaaaaagaaaagtagagtgaaccggcgagtttattttgaaccggttg |
102 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||| | || | |||| |||||||||||| |||||||||||||||| |||| |
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| T |
27080602 |
aaaagtttttaaatgtgaatggtaaaataagttgg-tttgattgggaagtttttagacgaaaaaaaagagtgaaccggtgagtttattttgaaccagttg |
27080504 |
T |
|
| Q |
103 |
gg |
104 |
Q |
| |
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|| |
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|
| T |
27080503 |
gg |
27080502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 27024702 - 27024772
Alignment:
| Q |
160 |
ttcaaataatcgaatatcaaaaccctttccctccaaacaccaacatttcaactaaccgcgccattctccgacc |
232 |
Q |
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||||||||||||||||||||| | |||||||||||| || ||||| |||||||||||||| ||||||||||| |
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| T |
27024702 |
ttcaaataatcgaatatcaaa-ctctttccctccaa-catcaacacttcaactaaccgcgttattctccgacc |
27024772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 27080498 - 27080454
Alignment:
| Q |
160 |
ttcaaataatcgaatatcaaaaccctttccctccaaacaccaacat |
205 |
Q |
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||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
27080498 |
ttcaaataaccaaatatcaaaaccctttccctcc-aacaccaacat |
27080454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 30227170 - 30227293
Alignment:
| Q |
4 |
aaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaatggtaaaaagaaaagta-----gagtgaaccggcgagtttattttgaaccg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30227170 |
aaaaagtttttaaatgtgaatggtaaaataagttggttttgattgtgaagggtaaaaagaaaagaaaagaagagtgaaccggcgagtttattttgaaccg |
30227269 |
T |
|
| Q |
99 |
gttgggttgagtcatatggttatt |
122 |
Q |
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|||||||||||| ||||||||||| |
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| T |
30227270 |
gttgggttgagtaatatggttatt |
30227293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 30227361 - 30227415
Alignment:
| Q |
178 |
aaaaccctttccctccaaacaccaacatttcaactaaccgcgccattctccgacc |
232 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30227361 |
aaaaccatttccctccaaacaccaacacttcaactaaccgcgccattctccgacc |
30227415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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