View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_4 (Length: 514)
Name: NF6033_low_4
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 46607080 - 46606580
Alignment:
| Q |
19 |
atattagcatgtatttatgatatacttcttgttattgaatctttgtcggttataattaaattagttcatagcctttttcgatacatgctataaa------ |
112 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46607080 |
atattagcatgtatttatgata--cttcttgttattgaatctttgtcggttataattaaattagttcatagcctttttcgatacatgctataaaataaag |
46606983 |
T |
|
| Q |
113 |
-------------ttattttgtttttggccaatttcaggataaatttgtagtttcctgaaaaccagttatctgcacctggaatttctgtaataagcatgt |
199 |
Q |
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| T |
46606982 |
ttgttaaaaaaaattattttgttttttgccaatttcaggataaatttgtagtttcctgaaaaccagttatctgcacctggaatttctgtaataagcatgt |
46606883 |
T |
|
| Q |
200 |
cttannnnnnnnnnnnnnnnggctgattattcgactgcatgctgatctgttttatggttggataatcttcagagaaatatagtagaccgatataataata |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
46606882 |
cttattttgttttattttttggctgattattcgactgcatgctgatctgttttatggttggataatcttcagagaaatatagtagactgatataatagta |
46606783 |
T |
|
| Q |
300 |
gtttgaaatcatcgttatggtacttgaaatcttaagagttcagataattgtcacacaaatttaagtgacaaattagtttctaaaattaactagacttaat |
399 |
Q |
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| T |
46606782 |
gtttgaaatcatcgttatggtactttaaatctta-gagttcagataattgtctcacaaatttaagtgacaaattagtttctaaaattaactagacttaat |
46606684 |
T |
|
| Q |
400 |
tacatatttggctcatcaagcatcgccattagacaattttgacctcgatttttaaaacaagcaattttgacctttaatgatttgtattttggaatcccct |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46606683 |
tacatatttggctcatcaagcatcgccattagacaattttgacctcgatttttaaaacaagcaattttgacctttaatgatttgtattttggaatcccct |
46606584 |
T |
|
| Q |
500 |
tcat |
503 |
Q |
| |
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|||| |
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| T |
46606583 |
tcat |
46606580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 38475451 - 38475529
Alignment:
| Q |
24 |
agcatgtatttatgatatacttcttgttattgaatctttgtcggttataattaaattagttcatagcctttttcgatacatg |
105 |
Q |
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|||||||||||||| || ||| |||||||||||||||||| ||||||| || ||| ||||||||| |||||| |||||||| |
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| T |
38475451 |
agcatgtatttatggta--cttattgttattgaatctttgttggttatatttgaatcagttcatag-ctttttagatacatg |
38475529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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