View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_42 (Length: 238)
Name: NF6033_low_42
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_42 |
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| [»] chr5 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 14236897 - 14237118
Alignment:
| Q |
17 |
gaaagttcaatgacgaataaaagttttttactaaccttgactaagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14236897 |
gaaagttcaatgacgaataaaagttttttactaaccttgactaagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatg |
14236996 |
T |
|
| Q |
117 |
accgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14236997 |
accgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgc |
14237096 |
T |
|
| Q |
217 |
tcttcttaagcagaaccctacc |
238 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14237097 |
tcttcttaagcagaaccctacc |
14237118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 14378330 - 14378108
Alignment:
| Q |
17 |
gaaagttcaatgacgaataaaagtttt-ttactaaccttgactaagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaat |
115 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14378330 |
gaaagttcaatgacaaataaaagttttgttactgaccttgactaagaagtagaaccatgtcactgtcaagaacagaagttattcgatgcgcaatggtaat |
14378231 |
T |
|
| Q |
116 |
gaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttg |
215 |
Q |
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| T |
14378230 |
gaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttg |
14378131 |
T |
|
| Q |
216 |
ctcttcttaagcagaaccctacc |
238 |
Q |
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||||||||||| ||||||||||| |
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| T |
14378130 |
ctcttcttaagtagaaccctacc |
14378108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 41448063 - 41448285
Alignment:
| Q |
18 |
aaagttcaatgacgaataaaagttttt--tactaaccttgactaagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaat |
115 |
Q |
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||||||||| || |||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41448063 |
aaagttcaacgaagaataacagtttttattcctaaccttgatcaagaagtagaaccatatcactgtcaagaacagaagttattcgatgtgcaatggtaat |
41448162 |
T |
|
| Q |
116 |
gaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttg |
215 |
Q |
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||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
41448163 |
gacagtagagtccgtgaaatgctgcctaagagtttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcgtcaagcaccaaaatcttg |
41448262 |
T |
|
| Q |
216 |
ctcttcttaagcagaaccctacc |
238 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
41448263 |
ctcttcttaagaagaaccctacc |
41448285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 41434774 - 41434995
Alignment:
| Q |
19 |
aagttcaatgacgaataaaagtttt--ttactaaccttgactaagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatg |
116 |
Q |
| |
|
|||||||| || |||||| |||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
41434774 |
aagttcaacgaagaataatagttttcattcctaaccttgattaagaagtagaaccatatgactgtcaagaacagaagttattcgatgtgcaatggtaatg |
41434873 |
T |
|
| Q |
117 |
accgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgc |
216 |
Q |
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|| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
41434874 |
acagtagagtcggtgaaatgctgcctaagagtttgctgaatcaaattatctgtagctgtatcaactgatgcagtggcttcatcaagcaccaaaatcttgc |
41434973 |
T |
|
| Q |
217 |
tcttcttaagcagaaccctacc |
238 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
41434974 |
tcttcttaagaagaaccctacc |
41434995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 41441901 - 41442074
Alignment:
| Q |
65 |
tagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaatta |
164 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||| || || || ||||||| | ||||||||||||||||||||||||| |
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| T |
41441901 |
tagaaccaaatcactgtcaagaacagaagttattcgatgtgcaatggtaatgacagtagaatccatgaaatgttgcctaagagtttgctgaatcaaatta |
41442000 |
T |
|
| Q |
165 |
tctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgctcttcttaagcagaaccctacc |
238 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41442001 |
tctgtagctgtatcaactgaagcagttgcttcgtcaagcaccaaaatcttgctcttcttaagcagaaccctacc |
41442074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 32117724 - 32117884
Alignment:
| Q |
81 |
tcaagaacagaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaa |
180 |
Q |
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||||||| ||||||||||||||||||||||||||| || |||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||| |
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| T |
32117724 |
tcaagaatggaagttattcgatgcgcaatggtaatgtaggtagagtcagtgaaatgctgcataagagttggctgaaacaaattatctgtagctgtatcaa |
32117823 |
T |
|
| Q |
181 |
ccgaagcagttgcttcatcaagcaccaaaa---tcttgctcttcttaagcagaaccctacc |
238 |
Q |
| |
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| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32117824 |
ctgatgcagtggcttcatcaagcaccaaaatcttcttgctcttcttaagcagaaccctacc |
32117884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 22746014 - 22746164
Alignment:
| Q |
58 |
taagaagtagaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaat |
157 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||| | ||||||||||| | | |||||||||||| || |
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| T |
22746014 |
taagtagtagaaccatatcactgtcaataacagaagtttttcgatgtgcaattgtaatgactgtgcaatcagtgaaatgttgtcgaagagtttgctgtat |
22746113 |
T |
|
| Q |
158 |
caaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaa |
208 |
Q |
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||||||||| ||||| || ||||| || ||||| |||||||| || ||||| |
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| T |
22746114 |
caaattatcggtagccgtgtcaactgatgcagtggcttcatctagaaccaa |
22746164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 22665940 - 22666106
Alignment:
| Q |
66 |
agaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattat |
165 |
Q |
| |
|
|||||||| || |||||||| | ||||| |||| ||| |||||||||||||| ||| | || | |||||| | | ||| ||||||||||| | ||||| |
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| T |
22665940 |
agaaccatgtcgctgtcaaggattgaagtgattctatgagcaatggtaatgactgtgcaatctgagaaatgttgcttaattgtttgctgaataatattat |
22666039 |
T |
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| Q |
166 |
ctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgctcttcttaagcagaac |
232 |
Q |
| |
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|||| || |||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||||| |
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|
| T |
22666040 |
ctgttgccgtatcaactgatgcagttgcttcatcgagcaccaagatcttgcttttcttaagtagaac |
22666106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 22722831 - 22722997
Alignment:
| Q |
66 |
agaaccatatcactgtcaagaacagaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattat |
165 |
Q |
| |
|
|||||||| || |||||||| | ||||| |||| ||| |||||||||||||| ||| | || | |||||| | | ||| ||||||||||| | ||||| |
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| T |
22722831 |
agaaccatgtcgctgtcaaggattgaagtgattctatgagcaatggtaatgactgtgcaatctgagaaatgttgcttaactgtttgctgaataatattat |
22722930 |
T |
|
| Q |
166 |
ctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgctcttcttaagcagaac |
232 |
Q |
| |
|
|||| || |||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||||| |
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|
| T |
22722931 |
ctgttgccgtatcaactgatgcagttgcttcatcgagcaccaagatcttgcttttcttaagtagaac |
22722997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 22744541 - 22744399
Alignment:
| Q |
90 |
gaagttattcgatgcgcaatggtaatgaccgtggagtcagtgaaatgcttcctaagagtttgctgaatcaaattatctgtagctgtatcaaccgaagcag |
189 |
Q |
| |
|
||||| |||| ||| |||||||||||||| ||| | |||| ||||| ||| |||| ||||| ||||| | ||||||||||||||| ||||| || |||| |
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|
| T |
22744541 |
gaagtgattctatgagcaatggtaatgactgtgcaatcagaaaaatgtttcttaagtgtttgttgaataatattatctgtagctgtgtcaactgatgcag |
22744442 |
T |
|
| Q |
190 |
ttgcttcatcaagcaccaaaatcttgctcttcttaagcagaac |
232 |
Q |
| |
|
| ||||||||||| |||||||| ||||| |||||||| ||||| |
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|
| T |
22744441 |
tagcttcatcaagaaccaaaattttgcttttcttaaggagaac |
22744399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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