View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_low_49 (Length: 208)

Name: NF6033_low_49
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_low_49
NF6033_low_49
[»] chr6 (2 HSPs)
chr6 (9-160)||(34686481-34686632)
chr6 (9-61)||(32723622-32723674)
[»] chr2 (2 HSPs)
chr2 (62-109)||(26983781-26983828)
chr2 (126-160)||(26983820-26983854)
[»] chr7 (1 HSPs)
chr7 (118-160)||(30226953-30226995)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 34686481 - 34686632
Alignment:
Q  9 agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctagtgaatggttgtgagctcaacaagaagaaaaaatgaaaataatatcct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34686481 agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctagtgaatggctgtgagctcaacaagaagaaaaaatgaaaataatatcct 34686580  T
Q  109 tagaatgatattatttaaatatccttctaaataaacctaagccttctctatt 160  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34686581 tagaatgatattatttaaatatccttctaaataaacctaagacttctctatt 34686632  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 32723622 - 32723674
Alignment:
Q  9 agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctag 61  Q
    ||||||||||  |||||||| ||||| |||||||||| |||||||||||||||    
T  32723622 agcagagagtctgagtaacatactaagtcttccaatcacatgtccgatgctag 32723674  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 26983781 - 26983828
Alignment:
Q  62 tgaatggttgtgagctcaacaagaagaaaaaatgaaaataatatcctt 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26983781 tgaatggctgtgagctcaacaagaagaaaaaatgaaaataatatcctt 26983828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 26983820 - 26983854
Alignment:
Q  126 aatatccttctaaataaacctaagccttctctatt 160  Q
    |||||||||||||| ||||||||||||||||||||    
T  26983820 aatatccttctaaacaaacctaagccttctctatt 26983854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 30226953 - 30226995
Alignment:
Q  118 attatttaaatatccttctaaataaacctaagccttctctatt 160  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  30226953 attacttaaatatccttctaaacaaacttaagccttctctatt 30226995  T

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