View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6033_low_50 (Length: 208)
Name: NF6033_low_50
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 45270167 - 45269991
Alignment:
| Q |
18 |
aacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270167 |
aacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtatat |
45270068 |
T |
|
| Q |
118 |
ggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270067 |
ggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
45269991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 45273719 - 45273553
Alignment:
| Q |
16 |
caaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtat |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| ||| || |||| |
|
|
| T |
45273719 |
caaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtat |
45273620 |
T |
|
| Q |
116 |
atggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
194 |
Q |
| |
|
||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
45273619 |
atggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45273553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 45281963 - 45281797
Alignment:
| Q |
16 |
caaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtat |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| ||| || |||| |
|
|
| T |
45281963 |
caaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtat |
45281864 |
T |
|
| Q |
116 |
atggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
194 |
Q |
| |
|
||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
45281863 |
atggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45281797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 45293301 - 45293186
Alignment:
| Q |
18 |
aacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtatat |
117 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||||||||| |||||||||||||| ||| || || ||| |
|
|
| T |
45293301 |
aacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttat |
45293202 |
T |
|
| Q |
118 |
ggctcgatgctggacc |
133 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
45293201 |
ggctccaagctggacc |
45293186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 45302261 - 45302146
Alignment:
| Q |
18 |
aacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtatat |
117 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||||||||| |||||||||||||| ||| || || ||| |
|
|
| T |
45302261 |
aacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttat |
45302162 |
T |
|
| Q |
118 |
ggctcgatgctggacc |
133 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
45302161 |
ggctccaagctggacc |
45302146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University