View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_8 (Length: 456)
Name: NF6033_low_8
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 31200479 - 31200921
Alignment:
| Q |
9 |
gaagaatatgtacatgattttggatttttcaccctgtatcatgcatacttactagtcaataagatagcattcagaaatcaacaaacagttttataaaatt |
108 |
Q |
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| T |
31200479 |
gaagaaaatgtacatgattttggatttttcaccctgtatcatgcatacttactagtcaataagatagcattcagaaatcaacaaacagttttataaaatt |
31200578 |
T |
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| Q |
109 |
aatatttaactaatgtatacttctatgtcattcattcattataaggatcaagtactatactacactattgagaaataacaactgaatcggacaattcaac |
208 |
Q |
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| T |
31200579 |
aatatttaactaatgtatacttctatgtcattcattcattataaggatcaagtactatactacactattgagaaataacaactgaatcggacaattcaac |
31200678 |
T |
|
| Q |
209 |
cgattgagccttacaccaaatctttaatacggttcagttactttgggggtttgatcg-----------cagttcgaacagttcaagatagttgaactata |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
31200679 |
cgattgagccttacaccaaatctttaatacggttcagttactttgggggtttgatcgcagtttcgtctcagttcgaacagttcaagatagttgaaccata |
31200778 |
T |
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| Q |
298 |
atccaaattctccccgatttgatgtcaagttcgattttaaaaaactatcagtaattcacactctctaaatgaaaagcttcttccatggccctcaaaactg |
397 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200779 |
atccaaattctccccggtttgatgtcaagttcgattttaaaaaactgtcagtaattcacactctctaaatgaaaagcttcttccatggccctcaaaactg |
31200878 |
T |
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| Q |
398 |
acaaaagctctgcagagatcacgccatcgggttccaaattggt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200879 |
acaaaagctctgcagagatcacgccatcgggttccaaattggt |
31200921 |
T |
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