View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_9 (Length: 452)
Name: NF6033_low_9
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_9 |
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| [»] scaffold1108 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 13098655 - 13099048
Alignment:
| Q |
16 |
atggcctctcgaccttgtcattttaacttagaaaacctttaacttatgattggttagaaaggaatggagcggataagggagggattattttaaacctaat |
115 |
Q |
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| T |
13098655 |
atggcctctcgaccttgtcattttaacttagaaaacctttaaattatgattggttagaaaagaatggagcggataagggagggattattttaaacctaat |
13098754 |
T |
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| Q |
116 |
ttttgggaggcaagaatcaaaatatctcttggtttaactatatagctctcctctaaaggtatatatgactcggtctaactatatagctcttctctaaggt |
215 |
Q |
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| T |
13098755 |
ttttgggaggcaagaattaaaatatctcttggtttaactatatagctatcctctaaaggtatatatgactcggtctaactatatagctcttctctaaggt |
13098854 |
T |
|
| Q |
216 |
atatataaatttggagagaagataatatcaatgttataaaccgtgaataataaatgtttgattaattctattatgcaacaatgttatagaaactctattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13098855 |
atatataaatttggagagaagataatatcaatgttataaatcgtgaataataattgtttgattaattctattatgcaacaatgttatagcaactctattt |
13098954 |
T |
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| Q |
316 |
aacaataacttgtactgaataatgtatcacatacgattaaatattagaaatgaataatagaaatgtgaataacaacgttgaatattataatgtt |
409 |
Q |
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| T |
13098955 |
aacaataacttgcactgaataatgtatcacatacgatttaatattagaaatgaataatagaaatgtgaataacaacgttgaatattataatgtt |
13099048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 20548024 - 20548080
Alignment:
| Q |
212 |
aggtatatataaatttggagagaagataatatcaatgttataaaccgtgaataataa |
268 |
Q |
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| T |
20548024 |
aggtatatatgaatttgaagagaagataacatccatgttattaatcgtggataataa |
20548080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 20593687 - 20593743
Alignment:
| Q |
212 |
aggtatatataaatttggagagaagataatatcaatgttataaaccgtgaataataa |
268 |
Q |
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| T |
20593687 |
aggtatatatgaatttggagagaagataacattcatgttattaatcgtggataataa |
20593743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 26062369 - 26062275
Alignment:
| Q |
29 |
cttgtcattttaacttagaaaacctttaacttatgattggttagaaaggaatggagcggataagggagggattattttaaacctaatttttgggagg |
125 |
Q |
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| T |
26062369 |
cttgtcattttgccttagaaaacatttaaattatgattggttagaagggaatggaatgagaaa--gagatattattttaaacctaatttttgggagg |
26062275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 26062232 - 26062176
Alignment:
| Q |
211 |
aaggtatatataaatttggagagaagataatatcaatgttataaaccgtgaataata |
267 |
Q |
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| T |
26062232 |
aaggtatatatgaatttggggagaagataatatccatgttattaatcgtggataata |
26062176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 412 - 452
Alignment:
| Q |
212 |
aggtatatataaatttggagagaagataatatcaatgttat |
252 |
Q |
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| T |
412 |
aggtatatatgaatttggagagaagataacatccatgttat |
452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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