View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6034_low_3 (Length: 344)
Name: NF6034_low_3
Description: NF6034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6034_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 7952718 - 7953061
Alignment:
| Q |
1 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
100 |
Q |
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| T |
7952718 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
7952817 |
T |
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| Q |
101 |
catgaagttctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
200 |
Q |
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| T |
7952818 |
catgaagttcttgttcatgttcatgttgcttggttgaggatgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
7952917 |
T |
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| Q |
201 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgtattgtgatgagaaa |
300 |
Q |
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| T |
7952918 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgaattgtgatgagaaa |
7953017 |
T |
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| Q |
301 |
atgggatgagaaggtttggttataaagagagtgagtgatgatga |
344 |
Q |
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| T |
7953018 |
atgggatgagaaggtttggttataaagagagtgagtgatgatga |
7953061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7936784 - 7937051
Alignment:
| Q |
1 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
100 |
Q |
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| T |
7936784 |
tcatcacaagaagatctatccactagctcctgaaacacagggtgttgaacaacattggagttcacaaggtattgtcgccgcgactttccgacatagacag |
7936883 |
T |
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| Q |
101 |
catgaagttctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
200 |
Q |
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| T |
7936884 |
catgaagctcttgttcttgtt------gcttggaggaggaagagatagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
7936977 |
T |
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| Q |
201 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaa |
274 |
Q |
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| T |
7936978 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaagtgaa |
7937051 |
T |
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