View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6035_high_4 (Length: 240)
Name: NF6035_high_4
Description: NF6035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6035_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 14916310 - 14916538
Alignment:
| Q |
5 |
agtcatagctattacaaagtaaataagatgat---catatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagag----agagaga |
97 |
Q |
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| T |
14916310 |
agtcataactattacaaagtaaataagatgatgatcatatgagatatgaagaaatttgactggtccattgacgaaagaattagtaagagagagagagaga |
14916409 |
T |
|
| Q |
98 |
ttaactaatcatttgacgaaatgattaatcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataattttctcatatgagggtaac |
197 |
Q |
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| T |
14916410 |
ttaactaatcatttgacgaaatgattagtcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataattttctcatatgagggtaac |
14916509 |
T |
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| Q |
198 |
ccaaatagg-ttaaagggtaataacaact |
225 |
Q |
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| T |
14916510 |
ccaaataggtttaaagggtaataacaact |
14916538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 48516019 - 48515818
Alignment:
| Q |
1 |
atagagtcatagctattacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagatta |
100 |
Q |
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| T |
48516019 |
atagagccatggcaattacaaattaaataagatgatcatatgaggtctaaagaaacttgactaatcctttaaccaaaggattagtaagagagatagattg |
48515920 |
T |
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| Q |
101 |
actaatcatttgacgaaatgattaatcagagagggctttg-aaaacctcagaaagaatgagactagtgccaagaataattttctcatatgagggtaaccc |
199 |
Q |
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| T |
48515919 |
actaattatttgacgaaatgattagtcagagagggttttgaaaaaccttagaaagaatgagactagtgtcaatagtaattttctcatatgagggtaaccc |
48515820 |
T |
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| Q |
200 |
aa |
201 |
Q |
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|| |
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| T |
48515819 |
aa |
48515818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 6788609 - 6788775
Alignment:
| Q |
15 |
attacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagattaactaatcatttgac |
114 |
Q |
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|||| |||||||||||||||| ||||||| | | ||||||||||| |||| | ||||| ||| |||||||||||||| ||||| | || ||||||| |
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| T |
6788609 |
attataaagtaaataagatgaacatatgatgtttaaagaaatttgattggtactttgacgaaaagattagtaagagagaaagattggttgattatttgac |
6788708 |
T |
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| Q |
115 |
gaaatgattaatcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataatttt |
181 |
Q |
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| T |
6788709 |
gaaatgaatagatagagagggctttgtaaacctcaaaaagaatgaaactagtgtgaataataatttt |
6788775 |
T |
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