View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6035_low_1 (Length: 494)
Name: NF6035_low_1
Description: NF6035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6035_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 44563311 - 44562842
Alignment:
| Q |
17 |
agttggaatgtttattgctatactatgcatgttagtatctggcgtggtagaatggaaaagaaggaccatggctattaataatcctataggatttgaaccg |
116 |
Q |
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| T |
44563311 |
agttggaatgtttattgctatactatgcatgttagtatctggcgtggtagaatggaaaagaaggaccatggctattaataatcctataggatttgaaccg |
44563212 |
T |
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| Q |
117 |
agaaatggtgcgatttcttccatgtcgggaatgtggttaattcctcagttagcactagcaggattttctgatgcatttactttggttggacaagttgaat |
216 |
Q |
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| T |
44563211 |
agaaatggtgcgatttcttccatgtcgggaatgtggttaattcctcagttagcactagcaggattttctgatgcatttactttggttggacaagttgaat |
44563112 |
T |
|
| Q |
217 |
tttactacaaacagtttcctgagaatatgagaagtctcgcagggtcactgnnnnnnngtggcttggcactatcaagttattttagtagtttgttgattac |
316 |
Q |
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| T |
44563111 |
tttactacaaacagtttcctgagaatatgagaagtcttgcagggtcactgtttttttgtggcttggcactatcaagttattttagtagtttgttgattac |
44563012 |
T |
|
| Q |
317 |
aattattcataggttgacggttaaatctgcaacagggaattggttaccacaggatttgaatgaagggagattggattacttttattacatgattactggt |
416 |
Q |
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| T |
44563011 |
aattattcataggttgacggttaaatctgcaacagggaattggttaccacaggatttgaatgaagggagattggattacttttattacatgattactggt |
44562912 |
T |
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| Q |
417 |
ttggaagttgttaatttgggttactttgtattgtgttctaggtggtataggtacaaagggaatgatgatg |
486 |
Q |
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| T |
44562911 |
ttggaagttgttaatttgggttactttgtattgtgttctaggtggtataggtacaaagggaatgaggatg |
44562842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 44541620 - 44541544
Alignment:
| Q |
339 |
aaatctgcaacagggaattggttaccacaggatttgaatgaagggagattggattacttttattacatgattactgg |
415 |
Q |
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| T |
44541620 |
aaatctgctacaggaaattggttaccagaggatcttaataaagggagattggaatatttttattacatgattgctgg |
44541544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 44541758 - 44541713
Alignment:
| Q |
201 |
gttggacaagttgaattttactacaaacagtttcctgagaatatga |
246 |
Q |
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| T |
44541758 |
gttggacaaattgaattttactataaacagtttcctgagaatatga |
44541713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 25289395 - 25289252
Alignment:
| Q |
197 |
tttggttggacaagttgaattttactacaaacagtttcctgagaatatgagaagtctcgcagggtcactgnnnnnnngtggcttggcactatcaagttat |
296 |
Q |
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| T |
25289395 |
tttggttggataagttgaattttactacaaaccgtttcctgagtatatgagaattcttgcagggtcattgtttttttgtggcttggcactatcaagttat |
25289296 |
T |
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| Q |
297 |
tttagtagtttgttgattacaattattcataggttgacggttaa |
340 |
Q |
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| T |
25289295 |
tttagtagtttgttgattacaattattcataggttgacggttaa |
25289252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 459
Target Start/End: Complemental strand, 25288140 - 25288065
Alignment:
| Q |
379 |
aagggagattggattacttttattacatgattactggtttggaagttgttaatttgggttactttgtattgtgttctaggt |
459 |
Q |
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| T |
25288140 |
aagggagattggattactt-----acatgattactggtttggaagttgttaatttaggttactttgtattgtgttataggt |
25288065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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