View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6035_low_3 (Length: 306)
Name: NF6035_low_3
Description: NF6035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6035_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 14915945 - 14916242
Alignment:
| Q |
12 |
atcatataaatgtttgaggaattttatacattaagaacttttgatgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtat |
111 |
Q |
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| T |
14915945 |
atcatatatatgtttgtggaattttatacattaagaacttttgatgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtat |
14916044 |
T |
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| Q |
112 |
tgggacaccaatgtgatactgagaggatcatgtggtactttaaaaaggccatgaattcaagatcattac-----nnnnnnnnnttcattgtactaaaaag |
206 |
Q |
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| T |
14916045 |
tgggacaccaatgtgata--gtgaggatcatgtggtactttaaaaaggccatgaattcaagatcattacaaaaaaaaaaaaaaatcattgtactaaaaag |
14916142 |
T |
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| Q |
207 |
ttgcaatgatgttaattattataaaaaagtttaccatgatacaagaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatgatgc |
306 |
Q |
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| T |
14916143 |
ttgcaatgatgttaattattataaaaaagtttaccatgatacaagaaagctacaatgatgttgattagcttaccattgtacttgaaaattacaatgatgc |
14916242 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 48516190 - 48516089
Alignment:
| Q |
204 |
aagttgcaatgatgttaattattataaaaaagtttaccatgatacaagaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatga |
303 |
Q |
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| T |
48516190 |
aagttacaatgatgttgactattatcaaagagtttaccattgtattaagaagttacaatgatgttgattagtttaccaatgtatttgaaaattacaatga |
48516091 |
T |
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| Q |
304 |
tg |
305 |
Q |
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| T |
48516090 |
tg |
48516089 |
T |
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