View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6036_high_2 (Length: 473)
Name: NF6036_high_2
Description: NF6036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6036_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 26979379 - 26978929
Alignment:
| Q |
18 |
gaacacaatacatttctaagagctgttgtaccaatatttccaagatagacaacaagcttcaagcgaaactcaagatcatagattctgagagagacatttg |
117 |
Q |
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| T |
26979379 |
gaacacaatacatttctaagagctgttgtaccaatatttccaagatagacaacaagcttcaagcgaaactcaagatcatagattctgagagagacatttg |
26979280 |
T |
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| Q |
118 |
gaagcagtgctttgaggaatggatcggccaactcaagatcagaaagtcgtcatcagactactaaagttcctcctccagatgaggtaactgt--------- |
208 |
Q |
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| T |
26979279 |
gaagcagtgctttgaggaatggatcggccaactcaagatcagaaagtcgtcatcagactactaaagttcctcctccagatgaggtaactgtcaaggtgag |
26979180 |
T |
|
| Q |
209 |
----tgtcttgatactcatcctgtttctaaagtaattgaaacatttaaaggattcatgctgctgcgttattcatatcttttttcttttgaatgacggttg |
304 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26979179 |
ttgttgtcttgatactcatcctgtttctaaagtaatcgaaacattcaaaggattcatgctgctgcgttattcatatcttttttcttttgaatgacggttg |
26979080 |
T |
|
| Q |
305 |
ctgatctaacagaaactaaacaatcaaatatgttaatagcatgatagctgtttgtgttgatatgaaatcttttgcaacttatgcgaattcaacttaggct |
404 |
Q |
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| T |
26979079 |
ctgatctaacagaaactaaacaatcaaatatgttaatagcatgatagttgtttgtgttgatatgaaatcttttgcaacttatgcgaattcaacttaggct |
26978980 |
T |
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| Q |
405 |
taacgactatatatatttgtagtagcataacaacttagaaacatgttggct |
455 |
Q |
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| T |
26978979 |
taacgactatatatatttgtagtagcataacaacttagaaacatgttggct |
26978929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 48835635 - 48835502
Alignment:
| Q |
67 |
caacaagcttcaagcgaaactcaagatcatagattctgagagaga--catttggaagcagtgctttgaggaatggatcggccaactcaagatcagaaagt |
164 |
Q |
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|||| |||||||||| |||||||||||||| || || |||||||| |||||||||||||| ||| ||| |||||| ||||||||| |||||||||| | |
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| T |
48835635 |
caacgagcttcaagcaaaactcaagatcatggagtcagagagagaatcatttggaagcagtacttccagggatggattggccaactcgagatcagaaaat |
48835536 |
T |
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| Q |
165 |
cgtcatcagactactaaagttcctcctccagatg |
198 |
Q |
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| T |
48835535 |
cgtcatcagaatactagagttcctcctccggatg |
48835502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 48835458 - 48835409
Alignment:
| Q |
205 |
ctgttgtcttgatactcatcctgtttctaaagtaattgaaacatttaaag |
254 |
Q |
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||||| ||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
48835458 |
ctgttctcttgatactcatcctgtttcgaaagtaatcgaaacattcaaag |
48835409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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