View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6037_high_2 (Length: 251)

Name: NF6037_high_2
Description: NF6037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6037_high_2
NF6037_high_2
[»] chr8 (1 HSPs)
chr8 (88-203)||(26520864-26520979)
[»] chr3 (2 HSPs)
chr3 (88-203)||(34826650-34826766)
chr3 (83-134)||(3944890-3944941)
[»] chr7 (4 HSPs)
chr7 (119-203)||(12139073-12139158)
chr7 (85-137)||(41236786-41236838)
chr7 (99-144)||(4270187-4270232)
chr7 (93-133)||(23283883-23283923)
[»] chr1 (2 HSPs)
chr1 (96-195)||(41466221-41466321)
chr1 (96-193)||(45320464-45320562)
[»] chr2 (2 HSPs)
chr2 (96-170)||(3230097-3230172)
chr2 (99-144)||(14565204-14565249)
[»] chr5 (1 HSPs)
chr5 (86-147)||(39149458-39149519)
[»] chr4 (2 HSPs)
chr4 (82-134)||(12639959-12640011)
chr4 (93-145)||(33758117-33758168)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 26520864 - 26520979
Alignment:
Q  88 ggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgttt 186  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  26520864 ggtagcatttcacatgggaaggg-caatcccttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgttt 26520962  T
Q  187 ggaattgcacttgagac 203  Q
    |||||||||||||||||    
T  26520963 ggaattgcacttgagac 26520979  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 34826766 - 34826650
Alignment:
Q  88 ggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgttt 186  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||    
T  34826766 ggtagcatttcacatgggaaggggcaatccctttccactatgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgttt 34826667  T
Q  187 ggaattgcacttgagac 203  Q
    |||||||||||||||||    
T  34826666 ggaattgcacttgagac 34826650  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 3944890 - 3944941
Alignment:
Q  83 ttattggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaa 134  Q
    |||||||| |||||||||||||||| ||  ||||| ||||||||||||||||    
T  3944890 ttattggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 3944941  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 12139158 - 12139073
Alignment:
Q  119 ttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattgcacttgagac 203  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  12139158 ttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagttgagac 12139073  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 41236786 - 41236838
Alignment:
Q  85 attggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgt 137  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||||    
T  41236786 attggtggcatttcacatgggaaggtgtaaaaccttcccaccatgggaaatgt 41236838  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 4270187 - 4270232
Alignment:
Q  99 acatgggaaggggcaatcccttcccaccatgggaaatgtgtttttt 144  Q
    ||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  4270187 acatgggaaaggtgaatcctttcccaccatgggaaatgtgtttttt 4270232  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 23283923 - 23283883
Alignment:
Q  93 catttcacatgggaaggggcaatcccttcccaccatgggaa 133  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  23283923 catttcacatgggaaaggggaatcctttcccaccatgggaa 23283883  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 41466221 - 41466321
Alignment:
Q  96 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattgc 194  Q
    ||||||||||||||   ||  |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  41466221 ttcacatgggaaggtataaaaccttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgc 41466320  T
Q  195 a 195  Q
    |    
T  41466321 a 41466321  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 45320464 - 45320562
Alignment:
Q  96 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattg 193  Q
    ||||||||||||||   ||  |||||||||||||||||||||| ||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||    
T  45320464 ttcacatgggaaggtataaaaccttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattg 45320562  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 3230172 - 3230097
Alignment:
Q  96 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggtt 170  Q
    |||||||||||| || |||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3230172 ttcacatgggaaaggccaatccttttccaccatgggaaaggtggttttttacctgcaatagcaagtcaaacaggtt 3230097  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 14565249 - 14565204
Alignment:
Q  99 acatgggaaggggcaatcccttcccaccatgggaaatgtgtttttt 144  Q
    ||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  14565249 acatgggaaaggtgaatcctttcccaccatgggaaatgtgtttttt 14565204  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 39149519 - 39149458
Alignment:
Q  86 ttggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtgttttttacc 147  Q
    ||||| |||||||||||||||| ||  ||||| ||||||||||||||||  | |||||||||    
T  39149519 ttggtggcatttcacatgggaaaggtgaatcctttcccaccatgggaaagtttttttttacc 39149458  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 12639959 - 12640011
Alignment:
Q  82 attattggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaa 134  Q
    ||||||||| |||||||||||||||| ||  ||||| || |||||||||||||    
T  12639959 attattggtggcatttcacatgggaaaggttaatccttttccaccatgggaaa 12640011  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 33758168 - 33758117
Alignment:
Q  93 catttcacatgggaaggggcaatcccttcccaccatgggaaatgtgtttttta 145  Q
    ||||||||||||||| || |||||| |||||||||| |||||||| |||||||    
T  33758168 catttcacatgggaaaggtcaatcctttcccaccat-ggaaatgtttttttta 33758117  T

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