View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_high_1 (Length: 635)
Name: NF6039_high_1
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 33 - 618
Target Start/End: Complemental strand, 42002320 - 42001736
Alignment:
| Q |
33 |
ctctgatagataatcctattctcaaagctacgatttgaactttaatttgtaaaattgtgtcaagttagtccttttcgaaagacccaatctccatcaatca |
132 |
Q |
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| T |
42002320 |
ctctaatagataatcctattctcaaagctacgatttgaactttaatttgtaaaattgtgtcaagttagtccttttcgaaagacccaatctccatcaatca |
42002221 |
T |
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| Q |
133 |
attatcagaggttttttaattgcaattttgtcatcagatgcaatattgcatcatatgctggctatgacccatgaaattataaatcttaacatatataata |
232 |
Q |
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| T |
42002220 |
attatcaaaggttttttaattgcaattttgtcatcagatgcaatattgcatcatatgctggctatgacctatgaaattataaatcttaacatatataata |
42002121 |
T |
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| Q |
233 |
acattttagatccttnnnnnnn-tacatttcagatgtagttggtttaatgctgtgcatcgatctcaaacggttgaatgaaaatatacgctgcaatatttt |
331 |
Q |
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| T |
42002120 |
acattttagatccttaaaaaaaatacatttcagatgtagttggtttaatgctgtgcatcgatctcaaacggttgaatgaaaatatacgctgcaatatttt |
42002021 |
T |
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| Q |
332 |
aacaacgaaaagaaaatctaaagcaaatatccaagattctaattttacacatattaaattaatcattacaaatcatgttcatcagaaataattaacnnnn |
431 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42002020 |
aacaacgaaaagaaaatctatagcaaatatccaagattctaattttacac--tttaaattaatcattacaaatcatgttcatcagaaataattaactttt |
42001923 |
T |
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| Q |
432 |
nnngacaaaattatagttattgtgtaaggcaatagctgcagggaatgtcactctgttaggtgttttaagaccaccaactcactnnnnnnntagtttgtgc |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
42001922 |
tttgacaaaattatagttattgtgtaaggcaatagctgcagggaatgtcactctgttaggtgttttaagaccaccaagtcactaaaaaaatagtttgtgc |
42001823 |
T |
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| Q |
532 |
cttgtttaacaacaacacacttaatttattttaagaaattttctaaacttgcaattttatgttaggttcttgtcttcatgtgcttct |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42001822 |
cttgtttaacaacaacacacttaatttattttaagaaattttctaaacttgcaattttatgttaggttcttgtcttcatgtgcttct |
42001736 |
T |
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