View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_high_2 (Length: 544)
Name: NF6039_high_2
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 5004798 - 5004269
Alignment:
| Q |
1 |
caaaagaggggttccaccttccactcataatatgaacagtggcacaaagagtgtctcccaaggaaccacttctaagacatgatttggatcttatccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5004798 |
caaaagaggggttccaccttccactcataataggaatagtggcacaaagggtgtctcccaaggaaccacttctaagacatgatttggatcttatccacca |
5004699 |
T |
|
| Q |
101 |
attgctcgagctcgggaatcctacaagaaaaaataaggttgttccaagcttttcagatagaccacatagatgtatgccaaaccaaaatacaccctagcct |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
5004698 |
attgctcgagctcgggaatcctaccagaaaaaataaggttgttccaagcttttcagatagaccacatagatgtatgctagaccaaaatacaccctagcct |
5004599 |
T |
|
| Q |
201 |
agtctttctatcacaccctaaagctacgaacatctgaaacaatccgaccaaattccccgacaaaacccagtcaaaccctagccacttacacaccaattac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
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| T |
5004598 |
agtctttctatcacaccctaaagctacgaacatctgaaacaatccgaccaaattccccggcaaaacccactcaaaccctagccacttacacaccaagtac |
5004499 |
T |
|
| Q |
301 |
caaaccctagacaccaccccacaagtaacaaaaagatgatccacaaattcgacactactcctacataattgacattaagcactcgtaagatccactaaac |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5004498 |
caaaccctagacaccacccaacaagtaacaaaaagatgatccgcaaattcgacactactcccacataattgacattaagcactcgtaagatccactaaac |
5004399 |
T |
|
| Q |
401 |
ccccagctttaaaagattctgacgcgacaggaacctatccaaaataatggtggtggttaaacaatcaaaattgcaatatactaaactttaacgcctagtc |
500 |
Q |
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|
|||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5004398 |
cccccgctttaaaagattctcacgcgacgggaacctatccaaaataatggtggtggttaaacaatcaaaattgcaatatactaaactttaacgcctagtc |
5004299 |
T |
|
| Q |
501 |
tattcaaactgaacccttacattacctatg |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5004298 |
tattcaaactgaacccttacattacctatg |
5004269 |
T |
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