View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_high_4 (Length: 452)
Name: NF6039_high_4
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 40821601 - 40822043
Alignment:
| Q |
1 |
ttgttaattagtttgatctttatatatacnnnnnnngacacattcaaagatgtttttgtgatttcgatatgtttatgtactattgtgaaaacgcctcaca |
100 |
Q |
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| T |
40821601 |
ttgttaattagtttgatctttatatatacaaaaaaagacacattcaaagatgtttttgtgatttcgatatgtttatgtactattgtgaaaacgcctcaca |
40821700 |
T |
|
| Q |
101 |
caaatagatatacatgatgatgtgtgaatgtatatataacacagtattaagtatattaaggcatgtcctttcaggtagcatttaggtactgtttgtcttt |
200 |
Q |
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| T |
40821701 |
caaatagatatacatgatgatgtgtgaatgtatatataacacagtattaagtatattaaggcatgtcctttcaggtagcatttaggtactgtttgtcttt |
40821800 |
T |
|
| Q |
201 |
tgttttgttcaattttattccccctctttttagtctaattagcctctgcaggcactttttacagttgttacaaagattaaaaacagtttaagcaaggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821801 |
tgttttgttcaattttattccccctctttttagtctaattagcctctgcaggcactttttacagttgttacaaagattaaaaacagtttaagcaaggaaa |
40821900 |
T |
|
| Q |
301 |
cagctagcataaatatctctcattttctttaccccgagaaaactggaaatcaattagtacaatcatcttattaattactagtttgttattctgactaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40821901 |
cagctagcataaatatctctcattttctttaccccgagtaaactggaaatcaattagtacaatcatcttattaattactagtttgttattctggctaatt |
40822000 |
T |
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| Q |
401 |
aatctccaaagactctcattagtaagaagatatttggtctgtg |
443 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
40822001 |
aatctccgaagactctcattagtaagaagatatttgatctgtg |
40822043 |
T |
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