View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6039_low_1 (Length: 725)

Name: NF6039_low_1
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6039_low_1
NF6039_low_1
[»] chr3 (17 HSPs)
chr3 (18-369)||(36233344-36233697)
chr3 (382-463)||(46150704-46150784)
chr3 (434-506)||(11349367-11349439)
chr3 (382-448)||(55373695-55373761)
chr3 (381-463)||(45081378-45081459)
chr3 (387-440)||(37520558-37520611)
chr3 (382-438)||(41458031-41458087)
chr3 (380-428)||(48648199-48648247)
chr3 (383-442)||(264465-264524)
chr3 (378-465)||(13701525-13701612)
chr3 (380-463)||(27082772-27082855)
chr3 (380-442)||(13477053-13477115)
chr3 (386-428)||(17603170-17603212)
chr3 (386-440)||(31974653-31974707)
chr3 (387-428)||(21727538-21727579)
chr3 (390-439)||(52281772-52281821)
chr3 (380-433)||(54458669-54458722)
[»] chr4 (20 HSPs)
chr4 (383-721)||(46168137-46168474)
chr4 (387-524)||(19080388-19080525)
chr4 (382-470)||(24374787-24374875)
chr4 (380-426)||(12368666-12368712)
chr4 (382-438)||(47688478-47688534)
chr4 (382-428)||(2444370-2444416)
chr4 (380-438)||(26147031-26147089)
chr4 (380-446)||(31329708-31329774)
chr4 (378-428)||(52871292-52871342)
chr4 (382-428)||(53772805-53772851)
chr4 (383-440)||(1866342-1866399)
chr4 (380-428)||(24551932-24551980)
chr4 (380-428)||(53773595-53773643)
chr4 (380-443)||(20774174-20774237)
chr4 (380-470)||(142491-142581)
chr4 (382-428)||(42882690-42882736)
chr4 (380-438)||(47687905-47687963)
chr4 (382-440)||(47785796-47785854)
chr4 (380-441)||(2446157-2446218)
chr4 (382-439)||(9365167-9365224)
[»] chr8 (8 HSPs)
chr8 (18-289)||(22631625-22631896)
chr8 (83-324)||(28323447-28323680)
chr8 (380-470)||(14825639-14825729)
chr8 (380-440)||(8996970-8997030)
chr8 (380-440)||(38576298-38576358)
chr8 (380-445)||(41974636-41974701)
chr8 (382-428)||(22320372-22320418)
chr8 (382-448)||(32979812-32979878)
[»] chr2 (15 HSPs)
chr2 (380-721)||(12725330-12725671)
chr2 (387-512)||(24933839-24933964)
chr2 (394-524)||(11007241-11007371)
chr2 (387-483)||(29719449-29719545)
chr2 (380-440)||(1297119-1297179)
chr2 (380-440)||(9275582-9275642)
chr2 (382-443)||(11750255-11750316)
chr2 (380-433)||(23857027-23857080)
chr2 (380-440)||(9276326-9276386)
chr2 (403-470)||(18820451-18820518)
chr2 (382-461)||(36237629-36237707)
chr2 (382-440)||(1296377-1296435)
chr2 (386-440)||(15774204-15774258)
chr2 (380-438)||(18174668-18174726)
chr2 (380-446)||(29559410-29559476)
[»] chr5 (19 HSPs)
chr5 (387-524)||(6476703-6476840)
chr5 (388-524)||(10554550-10554686)
chr5 (385-433)||(38057598-38057646)
chr5 (380-438)||(235587-235645)
chr5 (388-470)||(25858213-25858295)
chr5 (403-448)||(27363762-27363807)
chr5 (380-428)||(237829-237877)
chr5 (382-446)||(4084877-4084941)
chr5 (380-428)||(7632090-7632138)
chr5 (380-428)||(19128765-19128813)
chr5 (380-428)||(19359699-19359747)
chr5 (382-437)||(29046026-29046081)
chr5 (382-428)||(234698-234744)
chr5 (380-438)||(236927-236985)
chr5 (380-438)||(17071219-17071277)
chr5 (387-441)||(27364482-27364536)
chr5 (380-426)||(28705889-28705935)
chr5 (387-428)||(1283533-1283574)
chr5 (387-428)||(10554524-10554565)
[»] chr7 (29 HSPs)
chr7 (409-512)||(18977033-18977136)
chr7 (419-486)||(42420392-42420459)
chr7 (387-448)||(7668484-7668545)
chr7 (380-473)||(37950432-37950524)
chr7 (380-440)||(25343298-25343358)
chr7 (382-473)||(30660590-30660680)
chr7 (382-440)||(25342494-25342552)
chr7 (380-440)||(46428182-46428242)
chr7 (377-428)||(25599014-25599065)
chr7 (380-438)||(3772525-3772583)
chr7 (380-438)||(27948441-27948499)
chr7 (387-469)||(30661424-30661505)
chr7 (387-469)||(37949607-37949688)
chr7 (386-438)||(3029197-3029249)
chr7 (380-428)||(14305085-14305133)
chr7 (380-440)||(16664122-16664182)
chr7 (380-440)||(17638482-17638542)
chr7 (386-446)||(24389607-24389667)
chr7 (382-438)||(26636100-26636156)
chr7 (380-428)||(37395508-37395556)
chr7 (380-428)||(45099902-45099950)
chr7 (386-441)||(14686132-14686187)
chr7 (383-446)||(24719333-24719396)
chr7 (387-438)||(26636859-26636910)
chr7 (379-441)||(1417602-1417664)
chr7 (239-319)||(7171571-7171652)
chr7 (387-428)||(13785602-13785643)
chr7 (382-443)||(40273557-40273618)
chr7 (380-437)||(45161964-45162021)
[»] chr6 (11 HSPs)
chr6 (502-627)||(8496384-8496510)
chr6 (644-714)||(8496320-8496389)
chr6 (380-438)||(10171271-10171329)
chr6 (387-469)||(19323735-19323816)
chr6 (380-438)||(26528818-26528876)
chr6 (382-443)||(8488466-8488527)
chr6 (380-437)||(19310996-19311053)
chr6 (382-438)||(10171964-10172020)
chr6 (382-473)||(19322979-19323070)
chr6 (382-438)||(26529511-26529567)
chr6 (380-445)||(18227727-18227791)
[»] chr1 (23 HSPs)
chr1 (382-499)||(13262830-13262947)
chr1 (417-520)||(8548852-8548955)
chr1 (380-473)||(49680806-49680898)
chr1 (377-433)||(10120775-10120831)
chr1 (382-448)||(30932784-30932850)
chr1 (380-464)||(8987785-8987869)
chr1 (382-438)||(10121551-10121607)
chr1 (377-438)||(32038469-32038530)
chr1 (381-441)||(169623-169683)
chr1 (387-467)||(11548802-11548881)
chr1 (386-441)||(7558450-7558505)
chr1 (380-443)||(30663970-30664033)
chr1 (387-438)||(34309229-34309280)
chr1 (386-428)||(4433856-4433898)
chr1 (380-426)||(13142678-13142724)
chr1 (388-470)||(19171781-19171863)
chr1 (382-428)||(25469095-25469141)
chr1 (377-443)||(30663350-30663416)
chr1 (386-428)||(37577654-37577696)
chr1 (380-441)||(11704804-11704865)
chr1 (380-433)||(19172579-19172632)
chr1 (387-428)||(26118675-26118716)
chr1 (380-433)||(36390371-36390424)
[»] scaffold0176 (1 HSPs)
scaffold0176 (380-445)||(26587-26652)
[»] scaffold0504 (1 HSPs)
scaffold0504 (380-428)||(5388-5436)
[»] scaffold0093 (1 HSPs)
scaffold0093 (382-443)||(23722-23783)
[»] scaffold0085 (1 HSPs)
scaffold0085 (387-428)||(22079-22120)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 36233697 - 36233344
Alignment:
Q  18 gttttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatttcaagcttcaacagattcattgattcgaatttgg 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  36233697 gttttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctggagattcatgatttcaagcttcaacaaattcattgattcgaatttgg 36233598  T
Q  118 atgtt--aatgcttccacccatcagtgaaggtaaagccatatcccgtaaaattggtttcagatgagataatcaaatccaacattcgaaaatcaattgagg 215  Q
    |||||  |||||||| ||||| || |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36233597 atgttttaatgcttctacccaccattgaaggtaaagccagatcccacaaaattggtttcagatgagataatcaaatccaacattcggaaatcaattgagg 36233498  T
Q  216 agtgattatgtgcaggcacttgattgtgtacaaatagagaatatctatctcaatggcagccattgatgattgtgcttcttgaagcttctggacctaatct 315  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  36233497 agtgattatgtgcagccacttgtttgtgtacaaatagagaatatatatctcagtgacagccattgatgattgtgcttcttgaagcttctggacctaatct 36233398  T
Q  316 tatgaagaagaaaaatttgattgaaatataatatatctcaatgaatagttagac 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233397 tatgaagaagaaaaatttgattgaaatataatatatctcaatgaatagttagac 36233344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 46150784 - 46150704
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggct 463  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||| ||| |||||||| |||| | ||||||||||||||    
T  46150784 gagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatttatttta-tttgatcaaaggct 46150704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 11349439 - 11349367
Alignment:
Q  434 caaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctccataaatttccaactttctt 506  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||  |||||||||||||| || |||||||    
T  11349439 caaccatccatttaagtttgatcaaaggctcacaattctcattaaaaagtctccataaattttcacctttctt 11349367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 55373761 - 55373695
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaa 448  Q
    |||| ||||| |||||| || ||||||||||||||| |||||||||| || ||||||||||||||||    
T  55373761 gagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaattccaaccattcatttaa 55373695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 45081459 - 45081378
Alignment:
Q  381 tgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggct 463  Q
    ||||| |||||||||||| ||   ||||||||||||| |||||||||| ||| |||||||| |||| | ||||||||||||||    
T  45081459 tgagtcaggatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaaccatttatttta-tttgatcaaaggct 45081378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 37520611 - 37520558
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| ||| |||||||    
T  37520611 aggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccat 37520558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 41458031 - 41458087
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||| ||||| ||||||||| ||||||||||||||| |||||||||| ||| |||||    
T  41458031 gagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaacc 41458087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 48648199 - 48648247
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  48648199 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 48648247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 264465 - 264524
Alignment:
Q  383 agttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattc 442  Q
    ||||||||||| |||| || ||||||||| |||||||||||||||| ||| ||| |||||    
T  264465 agttaggatccattgacaccaggtgtcaatggatttgttgacaccaaatctcaagcattc 264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 13701525 - 13701612
Alignment:
Q  378 aaatgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctca 465  Q
    |||| ||||||||| ||||||||  || | ||||||||||  ||||||| | ||| ||||| | ||||||||||||||||||| ||||    
T  13701525 aaataagttaggattcgttgatatcagatatcaacggattcattgacacgaaatctcaaccctccatttaagtttgatcaaagactca 13701612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 27082772 - 27082855
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggct 463  Q
    |||||| ||||||| |||| |||||||||||||| ||| |||||||||| |||| |||| | | ||| ||||| ||||| ||||    
T  27082772 atgagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatcctaaccttccgtttcagtttaatcaatggct 27082855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 13477053 - 13477115
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattc 442  Q
    |||||| |||||||||||| || ||||||||||| |||  ||||||||| |||| ||||||||    
T  13477053 atgagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatcctaaccattc 13477115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 17603170 - 17603212
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||| || ||||||||||||||| ||||||||||    
T  17603170 taggatccgttgacaccaggtgtcaacggattcgttgacacca 17603212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 31974653 - 31974707
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||| || | ||||||||||||| |||||||||| ||| |||||||    
T  31974653 taggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaaccat 31974707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 21727579 - 21727538
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  21727579 aggatccgttgacaccaggtgtcaacggattcgttgacacca 21727538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 52281772 - 52281821
Alignment:
Q  390 atccgttgatactaggtgtcaacggatttgttgacaccatatcccaacca 439  Q
    ||||||||||||  |||||||||||||| |||||||||| ||| ||||||    
T  52281772 atccgttgatacctggtgtcaacggattcgttgacaccagatctcaacca 52281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 54458722 - 54458669
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    |||| |||||||||||||| ||  |||||||||||||| |||||||||| ||||    
T  54458722 atgaattaggatccgttgacacctggtgtcaacggattggttgacaccaaatcc 54458669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 383 - 721
Target Start/End: Original strand, 46168137 - 46168474
Alignment:
Q  383 agttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatgg 482  Q
    |||||||||||||||| |  ||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  46168137 agttaggatccgttgacatcaggtgtcaacggaattgttgacactaaatcctaaccattcatttaagtttgatcaaag-ctcataattttcattaaatgg 46168235  T
Q  483 tctccataaatttccaactttcttgctgcacccaatcacgctttgtttcaattttgtgcctaaaaaaccaggaatgaaatcagccaccacctgtatgtac 582  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  46168236 tctccataaatttccaactttcttgctgcacccgatcacgctttgtttcaatttagtgcctaaaaaacctggaatgaaatcagccaccacttgtatgtac 46168335  T
Q  583 agccaccgtttattcaagagtttcttttggccgatctcaaattatctaactatacaccaccaattattcacggccagtaaagtaattggcttgaaactca 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  46168336 agccaccgtttattcaagagtttcttttggccgatctcaaattatctaactatacaccaccaattattcacagcccgtaaagtaattggcttgaaactca 46168435  T
Q  683 atttgaatgaaatcatctcagtgctcctctctgctcctc 721  Q
    ||||||||||||||||||| || ||||||| || |||||    
T  46168436 atttgaatgaaatcatctccgttctcctctttgttcctc 46168474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 387 - 524
Target Start/End: Original strand, 19080388 - 19080525
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctc 486  Q
    |||||| ||||| || ||||||||||||||| |||||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  19080388 aggatctgttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccattcatttaagttttatcaaaggctcataattctcattaaatggtctc 19080487  T
Q  487 cataaatttccaactttcttgctgcacccaatcacgct 524  Q
    ||||||||||||||||||||| || ||  |||||||||    
T  19080488 cataaatttccaactttcttgatgtacggaatcacgct 19080525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 382 - 470
Target Start/End: Original strand, 24374787 - 24374875
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    |||| |||||||||||| || || |||||||| ||| |||||||||| ||| ||||| | |||||||||||||||||||||| ||||||    
T  24374787 gagtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatctcaaccttccatttaagtttgatcaaaggcttataatt 24374875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 12368712 - 12368666
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacac 426  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  12368712 atgagtcaggatccgttgacactaggtgtcaacggatttgttgacac 12368666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 47688534 - 47688478
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  47688534 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 47688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 2444370 - 2444416
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||    
T  2444370 gagttaggatccgttgacaccaggtgtcaacggattcgttgacacca 2444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 26147089 - 26147031
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||||    
T  26147089 atgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 26147031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 446
Target Start/End: Complemental strand, 31329774 - 31329708
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcattt 446  Q
    |||||| |||||||||||| || ||||||||||||||| ||| |||||| |||| ||||||| ||||    
T  31329774 atgagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccattgattt 31329708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 52871292 - 52871342
Alignment:
Q  378 aaatgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||| |||||||||| || ||||||||||||||| ||||||||||    
T  52871292 aaatgagttaagatccgttgacaccaggtgtcaacggattcgttgacacca 52871342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 53772805 - 53772851
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||    
T  53772805 gagttaggatccgttgacaccaggtgtcaacggattcgttgacacca 53772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 1866342 - 1866399
Alignment:
Q  383 agttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||||||||||||||| |||||||||||| | ||| |||||||||| ||| |||||||    
T  1866342 agttaggatccgttgacactaggtgtcaatgaattcgttgacaccaaatctcaaccat 1866399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 24551980 - 24551932
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||| |||||||| |||| || ||||||||||||||||||||||||||    
T  24551980 atgagataggatccattgacaccaggtgtcaacggatttgttgacacca 24551932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 53773643 - 53773595
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||||||||| |  ||||||||||||||| ||||||||||    
T  53773643 atgagttaggatccgttgacatcaggtgtcaacggattcgttgacacca 53773595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 20774237 - 20774174
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||||| ||||||| |||| || ||||||||||||||| |||||||||| ||| ||||| ||||    
T  20774237 atgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 20774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 470
Target Start/End: Complemental strand, 142581 - 142491
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    ||||| ||||||||||||| ||  |||||||||| |||  ||||||||| |||  |||||| ||| ||  ||| |||||||||||||||||    
T  142581 atgagataggatccgttgacaccgggtgtcaacgaattcattgacaccaaatcttaaccatccatctatttttaatcaaaggctcataatt 142491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 42882736 - 42882690
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||||||| || || |||||||||||| ||||||||||    
T  42882736 gagttaggatccgttgacaccagatgtcaacggattcgttgacacca 42882690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 47687905 - 47687963
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| || |||||| |||| ||| |||||||||| ||| |||||    
T  47687905 atgagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaacc 47687963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 47785854 - 47785796
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||| |||||| ||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  47785854 gagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 47785796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 2446218 - 2446157
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    ||||||||||||||||||| || |||||||||| |||| ||| |||||| ||| || |||||    
T  2446218 atgagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatctcatccatt 2446157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 9365167 - 9365224
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacca 439  Q
    |||| |||||||||| | || ||||||||||| |||||||||||||| ||| ||||||    
T  9365167 gagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatctcaacca 9365224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 22631896 - 22631625
Alignment:
Q  18 gttttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatttcaagcttcaacagattcattgattcgaatttgg 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22631896 gttttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctgaagattcatgatttcaagcttcaacagattcattgattcgaatttgg 22631797  T
Q  118 atgttaatgcttccacccatcagtgaaggtaaagccatatcccgtaaaattggtttcagatgagataatcaaatccaacattcgaaaatcaattgaggag 217  Q
    ||||||||||||| |||||  |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22631796 atgttaatgcttctacccactagtgaaggtaaaaccagatcccgcaaaattggtttcagatgagataatcaaatccaacattcggaaatcaattgaggag 22631697  T
Q  218 tgattatgtgcaggcacttgattgtgtacaaatagagaatatctatctcaatggcagccattgatgattgtg 289  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22631696 tgattatgtgcagccacttgtttgtgtacaaatagagaatatctatctcagtggcagccattgatgattgtg 22631625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 83 - 324
Target Start/End: Original strand, 28323447 - 28323680
Alignment:
Q  83 ttcaagcttcaacagattcattgattcgaatttggatgttaatgcttccacccatcagtgaaggtaaagccatatcccgtaaaattggtttcagatgaga 182  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||| |||| | |||| |||||||||||        
T  28323447 ttcaagcttcaacaaattcattgattcgaatttcgatgttaatgcttcctgccaccagtgaaggtaaagccagatcc-gcaaaactggtttcagat---- 28323541  T
Q  183 taatcaaatccaacattcgaaaatcaattgaggagtgattatgtgcaggcacttgattgtgtacaaatagagaatatctatctcaatggcagccattgat 282  Q
     |||||||||||||||||  ||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||  ||||||| | | ||||||||||    
T  28323542 -aatcaaatccaacattcataaatcaattgaggagtgattaagtgcagccacttgtttgtgtacaaatagaaaata--tatctcagtagtagccattgat 28323638  T
Q  283 gattgtgcttcttgaagcttctggacctaatcttatgaagaa 324  Q
     ||||||||||||||| |||||||||||||| ||||||||||    
T  28323639 aattgtgcttcttgaaacttctggacctaattttatgaagaa 28323680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 380 - 470
Target Start/End: Original strand, 14825639 - 14825729
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| || |||| |||| | ||||| ||||| ||||| |||||||||||    
T  14825639 atgagttaggatccgttgacactaggtgtcaacggattcgttgacatcaaatcctaaccttccatttcagtttaatcaatggctcataatt 14825729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 8997030 - 8996970
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  8997030 atgagtcaggatccgttgataccaggtgtcaactgatttgttgacaccaaatctcaaccat 8996970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 38576358 - 38576298
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  38576358 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 38576298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 41974636 - 41974701
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatt 445  Q
    |||||| |||||||||||| || ||||||||||||||| |||||||||| ||| || |||||||||    
T  41974636 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcatt 41974701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 22320372 - 22320418
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||||    
T  22320372 gagtcaggatccgttgatgccaggtgtcaacggattcgttgacacca 22320418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 32979878 - 32979812
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaa 448  Q
    |||| |||||||||||| || ||||||||||| ||||||| |||||| ||| || ||||| ||||||    
T  32979878 gagtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatcacatccattgatttaa 32979812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 380 - 721
Target Start/End: Complemental strand, 12725671 - 12725330
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcata------------ 467  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                
T  12725671 atgagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaaccattcatttaagtttgatcaaaggctcataatttttattaaa 12725572  T
Q  468 -------attttcattaaatggtctccataaatttccaactttcttgctgcacccaatcacgctttgtttcaattttgtgcctaaaaaaccaggaatgaa 560  Q
           |||||||||||||||||||||||||||||||||||||||                   |||||||||||||||| ||||||||||||||||||    
T  12725571 gctcataattttcattaaatggtctccataaatttccaactttctt-------------------tgtttcaattttgtgcttaaaaaaccaggaatgaa 12725491  T
Q  561 atcagccaccacctgtatgtacagccaccgtttattcaagagtttcttttggccgatctcaaattatctaactatacaccaccaattattcacggccagt 660  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||    
T  12725490 atcagccaccatttgtatgtacaaccaccgtttattcaagagtttcttttggcagatctcaaattatctaactatacaccaccaattattcagagccagt 12725391  T
Q  661 aaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctctgctcctc 721  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  12725390 aaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctttgttcctc 12725330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 387 - 512
Target Start/End: Original strand, 24933839 - 24933964
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctc 486  Q
    |||||||||||| ||  |||||||||| |||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24933839 aggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaaccattcatttaagtttgatcaaaggctcataattctcattaaatggtctc 24933938  T
Q  487 cataaatttccaactttcttgctgca 512  Q
    |||||||||  |||||||||| ||||    
T  24933939 cataaatttttaactttcttgatgca 24933964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 394 - 524
Target Start/End: Original strand, 11007241 - 11007371
Alignment:
Q  394 gttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctccataaat 493  Q
    ||||| || ||||||||||||||| |||||||| | ||| |||||||||| | || ||||||||||||||||||||| ||||||||||||||||| ||||    
T  11007241 gttgacaccaggtgtcaacggattcgttgacactaaatctcaaccattcaatcaaatttgatcaaaggctcataattctcattaaatggtctccacaaat 11007340  T
Q  494 ttccaactttcttgctgcacccaatcacgct 524  Q
    || ||||||||||| |||||| |||||||||    
T  11007341 tttcaactttcttgatgcaccgaatcacgct 11007371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 387 - 483
Target Start/End: Original strand, 29719449 - 29719545
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggt 483  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| |||||||||| ||| | ||||||    
T  29719449 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccctccatttaagtttgatcaaatgctcataattctcagttaatggt 29719545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 1297179 - 1297119
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  1297179 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 1297119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 9275582 - 9275642
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  9275582 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 9275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 11750255 - 11750316
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||||||||||| |||| || ||||||||||||||| |||||||||| ||| ||||| ||||    
T  11750255 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 11750316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 23857080 - 23857027
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    ||||||||||||||||||| ||  |||||||||||||| |||||||||| ||||    
T  23857080 atgagttaggatccgttgacacctggtgtcaacggattggttgacaccaaatcc 23857027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 9276386 - 9276326
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||||| |||||||||||| || ||||||||||| ||| |||||||||| ||| |||||||    
T  9276386 atgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccat 9276326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 18820451 - 18820518
Alignment:
Q  403 aggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    ||||||||||||||| |||||||||| |||| |||| | ||||| ||||| ||||| ||||| |||||    
T  18820451 aggtgtcaacggattcgttgacaccaaatcctaaccttccatttcagtttaatcaatggctcgtaatt 18820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 461
Target Start/End: Original strand, 36237629 - 36237707
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaagg 461  Q
    |||| |||||||||||| || |||||||||||||||  ||||||||| ||  |||||||| |||| | ||||||||||||    
T  36237629 gagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatttcaaccatttatttta-tttgatcaaagg 36237707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 1296377 - 1296435
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||| |||||||||||| || ||||||||||| ||| |||||||||| ||| |||||||    
T  1296377 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccat 1296435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 15774204 - 15774258
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||| ||  |||||||||| |||||||||||||| ||| |||||||    
T  15774204 taggatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaaccat 15774258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 18174726 - 18174668
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| |  ||||||||||| ||| |||||||||| ||| |||||    
T  18174726 atgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 18174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 446
Target Start/End: Complemental strand, 29559476 - 29559410
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcattt 446  Q
    ||||||||||||| ||||| || ||||||||||| ||| |||||||||| ||| ||| ||| |||||    
T  29559476 atgagttaggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaatcatccattt 29559410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 6476840 - 6476703
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctc 486  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  6476840 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaagttttatcaaaggctcataattctcattaaatggtctc 6476741  T
Q  487 cataaatttccaactttcttgctgcacccaatcacgct 524  Q
    ||||||||||||||||||||| || ||  |||||||||    
T  6476740 cataaatttccaactttcttgatgtacggaatcacgct 6476703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 388 - 524
Target Start/End: Original strand, 10554550 - 10554686
Alignment:
Q  388 ggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctcc 487  Q
    |||| |||||| || ||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| |||    
T  10554550 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaagttttatcaaaggctcataattctcattaaatggtttcc 10554649  T
Q  488 ataaatttccaactttcttgctgcacccaatcacgct 524  Q
    |||||||||||||||||||| || ||  |||||||||    
T  10554650 ataaatttccaactttcttgatgtacggaatcacgct 10554686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 38057646 - 38057598
Alignment:
Q  385 ttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  38057646 ttaggatccgttgacactaggtgtcaacggattggttgacaccaaatcc 38057598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 235587 - 235645
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||||||||||||| |||| || ||||||||||||||| |||||||||| ||| |||||    
T  235587 atgagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 235645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 25858213 - 25858295
Alignment:
Q  388 ggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||  || | | ||||| ||||| ||||| ||||| |||||    
T  25858213 ggatccgttgacactaggtgtcaacggattcgttgacaccaaatcataatcttccatttcagtttaatcaatggctcgtaatt 25858295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 27363807 - 27363762
Alignment:
Q  403 aggtgtcaacggatttgttgacaccatatcccaaccattcatttaa 448  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||    
T  27363807 aggtgtcaacggattcgttgacaccaaattccaaccattcatttaa 27363762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 237877 - 237829
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  237877 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 237829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 4084877 - 4084941
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcattt 446  Q
    |||| |||||||||||| ||  |||||||||| ||| |||||||||| ||| |||||||||||||    
T  4084877 gagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcattt 4084941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 7632090 - 7632138
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||| ||||||||||||| || ||||||||||||||| ||||||||||    
T  7632090 atgagataggatccgttgacaccaggtgtcaacggattcgttgacacca 7632138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 19128765 - 19128813
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  19128765 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 19128813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 19359699 - 19359747
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  19359699 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 19359747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 29046026 - 29046081
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaac 437  Q
    |||| |||||||||||| || ||||||||||||||| |||||||||| ||| ||||    
T  29046026 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 29046081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 234698 - 234744
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||| |||||||||||| || ||||||||||||||| ||||||||||    
T  234698 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 234744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 236985 - 236927
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||||||||||||| |||| || ||||||||||||||| || ||||||| ||| |||||    
T  236985 atgagttaggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaacc 236927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 17071219 - 17071277
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| |  ||||||||||| ||| |||||||||| ||| |||||    
T  17071219 atgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 17071277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 27364536 - 27364482
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    |||||||||||| || ||||||||| ||||| |||||||||| ||| ||||||||    
T  27364536 aggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaaccatt 27364482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 28705935 - 28705889
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacac 426  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||    
T  28705935 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacac 28705889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 1283574 - 1283533
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  1283574 aggatccgttgacaccaggtgtcaacggattcgttgacacca 1283533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 10554524 - 10554565
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  10554524 aggatccgttgacaccaggtgtcaacggattcgttgacacca 10554565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 409 - 512
Target Start/End: Original strand, 18977033 - 18977136
Alignment:
Q  409 caacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctccataaatttccaactttcttgc 508  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||     
T  18977033 caacggattcgttgacaccaaatctcaaccattcatttaagtttgatcaaaggctcataattctcattaaatggtctccataaattttcaactttcttga 18977132  T
Q  509 tgca 512  Q
    ||||    
T  18977133 tgca 18977136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 42420392 - 42420459
Alignment:
Q  419 gttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctc 486  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||| | |||||||||    
T  42420392 gttgacaccatatctcaacccttcatttaaatttgatcaaaggctcataattctcaattaatggtctc 42420459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 7668484 - 7668545
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaa 448  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| |||||||||||||||    
T  7668484 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaa 7668545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 37950524 - 37950432
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttc 473  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| || ||||  |||| | ||||||||||||||| || |||||    
T  37950524 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaatttta-tttgatcaaaggctcgtatttttc 37950432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 25343298 - 25343358
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  25343298 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 25343358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 30660590 - 30660680
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttc 473  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||| ||| || ||||  |||| | ||||||||||||||| || |||||    
T  30660590 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaatttta-tttgatcaaaggctcgtatttttc 30660680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 25342494 - 25342552
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  25342494 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 25342552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 46428182 - 46428242
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    |||||| |||||||||||| || ||||||||||||||| |||||||||| ||| |||||||    
T  46428182 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccat 46428242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 25599014 - 25599065
Alignment:
Q  377 aaaatgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  25599014 aaaatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 25599065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 3772583 - 3772525
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||||    
T  3772583 atgagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaacc 3772525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 27948441 - 27948499
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||||    
T  27948441 atgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 27948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 469
Target Start/End: Complemental strand, 30661505 - 30661424
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataat 469  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| ||||| || |||| | ||| |||||||||| |||||    
T  30661505 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgatttta-tttaatcaaaggcttataat 30661424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 469
Target Start/End: Original strand, 37949607 - 37949688
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataat 469  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| ||||| || |||| | ||| |||||||||| |||||    
T  37949607 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgatttta-tttaatcaaaggcttataat 37949688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 3029249 - 3029197
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||| || ||||||||||| ||| |||||||||| |||||||||    
T  3029249 taggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcccaacc 3029197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 14305085 - 14305133
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  14305085 atgagataggatccgttgacactaggtgtcaacggattcattgacacca 14305133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 16664182 - 16664122
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||| | ||| |||||||    
T  16664182 atgagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccat 16664122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 17638542 - 17638482
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccat 440  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||| | ||| |||||||    
T  17638542 atgagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccat 17638482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 24389667 - 24389607
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcattt 446  Q
    ||||||||||||| || |||||||||||||||  ||||||||| ||| |||||||| ||||    
T  24389667 taggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaaccatttattt 24389607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 26636100 - 26636156
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||| |||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  26636100 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 26636156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 37395556 - 37395508
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||||||||| || ||||||||||||||| ||| ||||||    
T  37395556 atgagttaggatccgttgacaccaggtgtcaacggattcgttaacacca 37395508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 45099950 - 45099902
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  45099950 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 45099902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 14686132 - 14686187
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    ||||||||||||| || | |||||||||||||||||||||||| ||| || |||||    
T  14686132 taggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctcatccatt 14686187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 24719333 - 24719396
Alignment:
Q  383 agttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcattt 446  Q
    |||||||||||||||| || || |||||||||||| |||||||||| ||  ||| |||||||||    
T  24719333 agttaggatccgttgacaccagatgtcaacggattcgttgacaccaaatatcaatcattcattt 24719396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 26636910 - 26636859
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  26636910 aggatccgttgacacaaggtgtcaacggattcgttgacaccaaatctcaacc 26636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 1417602 - 1417664
Alignment:
Q  379 aatgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    |||||| ||||||||||||| || ||||||||||| ||| |||||||||| |||  |||||||    
T  1417602 aatgagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatt 1417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 7171652 - 7171571
Alignment:
Q  239 ttgtgtacaaatagagaatatctatctcaatg----gcagccattgatgattgtgcttcttgaagcttctggacctaatcttatg 319  Q
    ||||||||| ||||| ||||| |||||| |||    ||||||||||||||||||| ||   |||||||||||||||||| |||||    
T  7171652 ttgtgtacatatagaaaatatatatctcgatgagtggcagccattgatgattgtgttt---gaagcttctggacctaattttatg 7171571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 13785643 - 13785602
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  13785643 aggatccgttgacaccaggtgtcaacggattcgttgacacca 13785602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 40273557 - 40273618
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    ||||||||||||||||| || ||||||||| | ||| |||||||||| ||| ||||| ||||    
T  40273557 gagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgttca 40273618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 45161964 - 45162021
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaac 437  Q
    |||||||||||||| |||| || |||||| |||||||| |||||||||| ||| ||||    
T  45161964 atgagttaggatccattgacaccaggtgttaacggattcgttgacaccaaatctcaac 45162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 502 - 627
Target Start/End: Complemental strand, 8496510 - 8496384
Alignment:
Q  502 ttcttgctgcaccc-aatcacgctttgtttcaattttgtgcctaaaaaaccaggaatgaaatcagccaccacctgtatgtacagccaccgtttattcaag 600  Q
    |||||||||||||| |||||| || ||||||||||| |||||||||||||||   |||||||||||||| || |||||||||| | ||||||||||||||    
T  8496510 ttcttgctgcaccccaatcacactctgtttcaatttagtgcctaaaaaaccaacgatgaaatcagccactacttgtatgtacaacaaccgtttattcaag 8496411  T
Q  601 agtttcttttggccgatctcaaattat 627  Q
    | |||||||||||||||||||||||||    
T  8496410 aatttcttttggccgatctcaaattat 8496384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 714
Target Start/End: Complemental strand, 8496389 - 8496320
Alignment:
Q  644 aattattcacggccagtaaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctct 714  Q
    |||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  8496389 aattattcacagccagtaaagtaat-ggcttcaaactcaatctgaatgaaatcatctcagtgctcctctct 8496320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 10171271 - 10171329
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||||| |||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  10171271 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 10171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 469
Target Start/End: Complemental strand, 19323816 - 19323735
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataat 469  Q
    |||||||||||| || ||||||||||| ||| |||||||||| ||| |||||||  |||| | |||||| |||||||||||||    
T  19323816 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcgatttta-tttgattaaaggctcataat 19323735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 26528818 - 26528876
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||||    
T  26528818 atgagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 26528876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 8488466 - 8488527
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||||||||||| |||| || ||||||||||||||| |||||||||| ||| ||||| ||||    
T  8488466 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 8488527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 19310996 - 19311053
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaac 437  Q
    |||||| |||||||||||| || |||||| ||||||||||||||||||| ||| ||||    
T  19310996 atgagtcaggatccgttgacaccaggtgttaacggatttgttgacaccaaatctcaac 19311053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 10172020 - 10171964
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||||    
T  10172020 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 10171964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 19322979 - 19323070
Alignment:
Q  382 gagttaggatcc-gttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttc 473  Q
    |||||||||||| ||||| || ||||||||||||||| |||||||||| ||| || ||||  |||| | ||||||||||||||| || |||||    
T  19322979 gagttaggatcccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaatttta-tttgatcaaaggctcgtatttttc 19323070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 26529567 - 26529511
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||| |||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  26529567 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 26529511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 18227727 - 18227791
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatt 445  Q
    |||||| |||||||||||| || || |||||||||||| |||||||||| ||| ||||||| ||||    
T  18227727 atgagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaaccatccatt 18227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 382 - 499
Target Start/End: Original strand, 13262830 - 13262947
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatg 481  Q
    ||||||||||||||||| || ||||||||||| ||| |||||||||| ||| ||||| | |||||||||||||||||||||| |||||| ||| | ||||    
T  13262830 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccctccatttaagtttgatcaaaggcttataattctcaattaatg 13262929  T
Q  482 gtctccataaatttccaa 499  Q
    | ||| | ||||| ||||    
T  13262930 gcctctagaaattgccaa 13262947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 8548852 - 8548955
Alignment:
Q  417 ttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttcattaaatggtctccataaatttccaactttcttgctgcaccca 516  Q
    |||||||||| | | | |||||||||||||||  || |||||||||| |||||| | |||| ||||||||||||||||| ||||||||||  |||||| |    
T  8548852 ttgttgacactaaaactcaaccattcatttaaagttaatcaaaggcttataattcttattacatggtctccataaattttcaactttctttatgcaccga 8548951  T
Q  517 atca 520  Q
    ||||    
T  8548952 atca 8548955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 49680806 - 49680898
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataattttc 473  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||| ||| || ||||  |||| | ||||||||||||||| || |||||    
T  49680806 atgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaatttta-tttgatcaaaggctcgtatttttc 49680898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 10120775 - 10120831
Alignment:
Q  377 aaaatgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||    
T  10120775 aaaatgagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatcc 10120831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 30932850 - 30932784
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaa 448  Q
    |||| |||||||||||| || ||||||||||||||| |||| ||||| ||| |||||||||||||||    
T  30932850 gagtgaggatccgttgacaccaggtgtcaacggattcgttggcaccaaatctcaaccattcatttaa 30932784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 8987785 - 8987869
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctc 464  Q
    |||||| |||||| ||||| |  ||||||||||||||| |||||||||| ||| ||||||| || |||  |||||||||||||||    
T  8987785 atgagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccatacagttatatttgatcaaaggctc 8987869  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 10121607 - 10121551
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  10121607 gagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatctcaacc 10121551  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 32038469 - 32038530
Alignment:
Q  377 aaaatgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||| ||||||||||| |||||||| ||||||||||| ||| |||||||||| ||| |||||    
T  32038469 aaaaagagttaggatcggttgataccaggtgtcaacgaattcgttgacaccaaatctcaacc 32038530  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 169683 - 169623
Alignment:
Q  381 tgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    |||| ||||||||||||| || ||||||||||| |||| ||||||||| ||| ||||||||    
T  169683 tgaggtaggatccgttgacaccaggtgtcaacgaatttattgacaccaaatctcaaccatt 169623  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 11548802 - 11548881
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcata 467  Q
    |||||||||||| || |||||||||| |||| |||||||| | ||| ||| |||| |||| | ||||||||||||||||||    
T  11548802 aggatccgttgacaccaggtgtcaacagattcgttgacactaaatctcaatcatttatttta-tttgatcaaaggctcata 11548881  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 7558450 - 7558505
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    ||||||||||||| || | |||||||||||||||||||||||| ||| || |||||    
T  7558450 taggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctcatccatt 7558505  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 30664033 - 30663970
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||||| |||||||||||| ||  |||||||||||||| |||||||||| ||| ||||| ||||    
T  30664033 atgagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaaccgttca 30663970  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 34309280 - 34309229
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaacc 438  Q
    |||||||||||| || ||||||||||||||| |||||||||| ||| |||||    
T  34309280 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 34309229  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 4433898 - 4433856
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    ||||||||||||| || ||||||||||||||| ||||||||||    
T  4433898 taggatccgttgacaccaggtgtcaacggattcgttgacacca 4433856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 13142724 - 13142678
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacac 426  Q
    |||||||||||||| |||| || ||||||||||||||| ||||||||    
T  13142724 atgagttaggatcccttgacaccaggtgtcaacggattcgttgacac 13142678  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 19171781 - 19171863
Alignment:
Q  388 ggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatttaagtttgatcaaaggctcataatt 470  Q
    ||||||||||| |  | ||||||||||||| |||||||||| |||| |||| | ||||| ||||| ||||| ||||| |||||    
T  19171781 ggatccgttgacatcaagtgtcaacggattcgttgacaccaaatcctaaccttccatttcagtttaatcaatggctcgtaatt 19171863  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 25469141 - 25469095
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||| |||||||||||| || ||||||||||||||| ||||||||||    
T  25469141 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacacca 25469095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 30663350 - 30663416
Alignment:
Q  377 aaaatgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||| |||| |||||||||||| || |||| |||||||||| |||||||||| ||| ||||| ||||    
T  30663350 aaaaagagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaaccgttca 30663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 37577696 - 37577654
Alignment:
Q  386 taggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||    
T  37577696 taggatccattgataccaggtgtcaacggattcgttgacacca 37577654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 11704865 - 11704804
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccatt 441  Q
    |||||||||||||| |||| || | ||||||||||||| |||||||||| ||| || |||||    
T  11704865 atgagttaggatccattgacaccaagtgtcaacggattcgttgacaccaaatctcatccatt 11704804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 19172632 - 19172579
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    |||||| ||||||| |||| || ||||||||||||||| |||||||||| ||||    
T  19172632 atgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatcc 19172579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 26118675 - 26118716
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || || |||||||||||||||||||||||    
T  26118675 aggatccgttgacaccagatgtcaacggatttgttgacacca 26118716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 36390424 - 36390371
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcc 433  Q
    ||||||||||||||||||| || ||||||||||| ||  |||||||||| ||||    
T  36390424 atgagttaggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatcc 36390371  T

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Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 26587 - 26652
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattcatt 445  Q
    |||||| |||||||||||| || ||||||||||||||| |||||||||| ||| ||||||| ||||    
T  26587 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccatccatt 26652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 5436 - 5388
Alignment:
Q  380 atgagttaggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||| |||||||||||| || ||||||||||||||||||||||||||    
T  5436 atgagtcaggatccgttgacaccaggtgtcaacggatttgttgacacca 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 23783 - 23722
Alignment:
Q  382 gagttaggatccgttgatactaggtgtcaacggatttgttgacaccatatcccaaccattca 443  Q
    |||||||||||| |||| || || |||||||||||| |||||||||| ||| ||||| ||||    
T  23783 gagttaggatccattgacaccagttgtcaacggattcgttgacaccaaatctcaaccgttca 23722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 22120 - 22079
Alignment:
Q  387 aggatccgttgatactaggtgtcaacggatttgttgacacca 428  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  22120 aggatccgttgacaccaggtgtcaacggattcgttgacacca 22079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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