View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_low_11 (Length: 227)
Name: NF6039_low_11
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 53089063 - 53089272
Alignment:
| Q |
16 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagttccctttttcc |
98 |
Q |
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| T |
53089063 |
attattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagttccctttttcc |
53089162 |
T |
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| Q |
99 |
ttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
198 |
Q |
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| T |
53089163 |
ttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
53089262 |
T |
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| Q |
199 |
atgagaaaca |
208 |
Q |
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|||||||||| |
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| T |
53089263 |
atgagaaaca |
53089272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 14333826 - 14333951
Alignment:
| Q |
62 |
attcatcatggaacttcttggctagttccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
161 |
Q |
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| T |
14333826 |
attcatcatggaacttcttggttagttccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
14333925 |
T |
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| Q |
162 |
gcctttccaacttctcaacaccttga |
187 |
Q |
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| T |
14333926 |
gcctttccaacttctcaacaccttga |
14333951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 14333763 - 14333814
Alignment:
| Q |
16 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat |
67 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14333763 |
attaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcat |
14333814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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