View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_low_4 (Length: 469)
Name: NF6039_low_4
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_low_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 14175293 - 14175743
Alignment:
| Q |
19 |
aaatatgagctaaatgtaaaatgatttatgtttggatatgtttatacaaaattgagtgttctttttaaagtaaaatatggttataagcgaatggaactaa |
118 |
Q |
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| T |
14175293 |
aaatatgagctaaatgtaaaatgatttatgtttggatatgtttatacaaaattgagtgttctttttaaagtaaaatatagttataagcgagtagaactaa |
14175392 |
T |
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| Q |
119 |
caaattcaatctctaaaatcaattctagtgactaacaaattcaaagtgagtggatacatctaaatacgtcagaatcaatcgtatacctctataatcaatt |
218 |
Q |
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| T |
14175393 |
caaattcaatctctaaaatcaattatagtgactaacaaattcaaagtgagtggatacatctaaacacgtcaaaatcaatggtatacttctataatcaatt |
14175492 |
T |
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| Q |
219 |
ttagattcttcaaaaataaaatcaagcataggctaaatatactagcatcagatcaactatttctaaaaaatgtccgtgacggtgtacaccattgagattg |
318 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||| |
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| T |
14175493 |
ttagattcttcaaaaataaaatcaagcgtagactaaatatactagcatcagatcaactatttctaaaaaatgtccgtgaccgcgaacaccgttgagattg |
14175592 |
T |
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| Q |
319 |
tgccaaccacatttgattgtgattctccgcaaaatcaaaggatgtgatgcactctattggtcacactgacagcatctagtttatcattttgttgaactaa |
418 |
Q |
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| T |
14175593 |
tgccaaccacatttgattgtgattctccgcaaaatcaaaggatgtgatgcactctattggtcacattgacagcatctagtttatcattttgttgaactaa |
14175692 |
T |
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| Q |
419 |
atttagaatttttctcacctgtattgattcccaattttttctggtaaaagc |
469 |
Q |
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| T |
14175693 |
atttataattttcctcacctgtattgattcccaattttttctggtaaaagc |
14175743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 14172049 - 14172130
Alignment:
| Q |
203 |
acctctataatcaattttagattcttcaaaaataaaatcaagcataggctaaatatactagcatcagatcaactatttctaa |
284 |
Q |
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| T |
14172049 |
acctctagaatcaattttagaatcttcaaaaataaaatcaagtatagactaaatatactagcttaagatcaagtttttctaa |
14172130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 14172249 - 14172292
Alignment:
| Q |
426 |
atttttctcacctgtattgattcccaattttttctggtaaaagc |
469 |
Q |
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| T |
14172249 |
attttgctcacctgtattgagtcccaattttttctggtaaaagc |
14172292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 14171948 - 14172011
Alignment:
| Q |
87 |
agtaaaatatggttataagcgaatggaactaacaaattcaatctctaaaatcaattctagtgac |
150 |
Q |
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| T |
14171948 |
agtaaaatatgtttaaaagtgagtagaactaacaaattcaatgtttaaaaccaattctagtgac |
14172011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 44439378 - 44439339
Alignment:
| Q |
24 |
tgagctaaatgtaaaatgatttatgtttggatatgtttat |
63 |
Q |
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| T |
44439378 |
tgagttaaatgtaaagtgatttatgtttggatatgtttat |
44439339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 411840 - 411803
Alignment:
| Q |
32 |
atgtaaaatgatttatgtttggatatgtttatacaaaa |
69 |
Q |
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| T |
411840 |
atgtaaaatgatttatgtttggatgtgtttatataaaa |
411803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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