View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6039_low_6 (Length: 322)
Name: NF6039_low_6
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6039_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 18479001 - 18479246
Alignment:
| Q |
56 |
aaagaatcattggaacactaacatcaagaaaagactcatcagaatggggatagatcccaccactcacaaaccaaaatccaacaacaacaatgataatgtt |
155 |
Q |
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| T |
18479001 |
aaagaatcattggaacattaacatcaagaaaagactcatcagaatggggatagatcccaccactcacaaaccaaaatccaacaacaacaacgataatgat |
18479100 |
T |
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| Q |
156 |
aatactgctatcaaacacgtgtctcaatgggagcatgttagattggaagctgaagcaagatcatcaatgttaggaaaaacacaaactcaacctttactat |
255 |
Q |
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| T |
18479101 |
aatactgctatcaaacacgtgtctcaatgggagcatgttagattggaagctgaagcaagatcaacaatgttaggaaaaactcaaactaaacttttactat |
18479200 |
T |
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| Q |
256 |
cttcatcaagttcatcaatgttatcactaaccaaacacaacaatgc |
301 |
Q |
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| T |
18479201 |
cttcatcaagttcatcaatgttatcactaaccaaacacaacaatgc |
18479246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18478937 - 18478981
Alignment:
| Q |
13 |
aatatgcactttacagatggtccacaatagcagctctcctgccaa |
57 |
Q |
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| T |
18478937 |
aatatgcacttcacagatggtccacaatagcagctctcctgccaa |
18478981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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