View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6039_low_7 (Length: 306)

Name: NF6039_low_7
Description: NF6039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6039_low_7
NF6039_low_7
[»] chr7 (11 HSPs)
chr7 (19-296)||(32726596-32726873)
chr7 (19-291)||(35957023-35957295)
chr7 (182-296)||(35981029-35981143)
chr7 (182-296)||(36002441-36002555)
chr7 (26-271)||(36218383-36218628)
chr7 (24-94)||(35946013-35946083)
chr7 (19-200)||(36223584-36223765)
chr7 (19-75)||(35981250-35981306)
chr7 (19-75)||(36002662-36002718)
chr7 (23-106)||(35976663-35976746)
chr7 (23-106)||(35998075-35998158)
[»] chr2 (1 HSPs)
chr2 (165-296)||(26329555-26329686)
[»] chr1 (2 HSPs)
chr1 (19-108)||(18124926-18125015)
chr1 (19-77)||(18117304-18117362)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 32726873 - 32726596
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726873 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaaga 32726774  T
Q  119 caagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttg 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726773 cacgtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttg 32726674  T
Q  219 atagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32726673 atagtcaaactttgctgaacacatggatatcaagatacaaatacttgcgatatttaggtttaagagattcttcctttg 32726596  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 35957295 - 35957023
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaaga 118  Q
    |||||||||||||||||||||||||||| || | |||||| | | |||||| |||||||||||||| || |||||| | ||||||||| | ||   |||     
T  35957295 caaagtacatgatttgatacatgatcttgctttgtatgtttctagagaggactttgtagcggtagactcgcatactcgtaatatacctcagcaagtaagg 35957196  T
Q  119 caagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttg 218  Q
    ||  || |||||||  || || ||||||| ||| ||| ||| ||||| ||||| | |||| |||||| |||  ||||||||||    ||||| || ||||    
T  35957195 catttatcagttgttaaagatgattcacttgaccttgatttgttccctaagtctagaagtgtgagaagtatactatttcccatctttggagtaggtcttg 35957096  T
Q  219 atagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttc 291  Q
    | ||| ||| | | ||||| | || ||| || || |||||||| ||| | ||||| |||||||| ||||||||    
T  35957095 aaagtgaaagtcttctgaataaattgatgtcgaggtacaaatatttgcgttatttgggtttaagtgattcttc 35957023  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 296
Target Start/End: Complemental strand, 35981143 - 35981029
Alignment:
Q  182 agaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaa 281  Q
    |||||| | ||||||||||| |||||| |||| |||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| |||||    
T  35981143 agaactttattatttcccatcaaaggactgggtcttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaa 35981044  T
Q  282 gagattcttcctttg 296  Q
    |  ||||||| ||||    
T  35981043 gtaattcttcatttg 35981029  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 296
Target Start/End: Complemental strand, 36002555 - 36002441
Alignment:
Q  182 agaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaa 281  Q
    |||||| | ||||||||||| |||||| |||| |||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| |||||    
T  36002555 agaactttattatttcccatcaaaggactgggtcttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaa 36002456  T
Q  282 gagattcttcctttg 296  Q
    |  ||||||| ||||    
T  36002455 gtaattcttcatttg 36002441  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 271
Target Start/End: Original strand, 36218383 - 36218628
Alignment:
Q  26 catgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaagacaagtaa 125  Q
    ||||||||||||||||||||| |  | |||||||| |||||||||||||||  |||||  || | |||  | |||||| |||||||  |||  ||  ||     
T  36218383 catgatttgatacatgatcttgcaatgtatgttgcaaaagaggagtttgtaatggtagtatctcgtacacgaaatatatctgaacaagcaaagcatttat 36218482  T
Q  126 cagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtca 225  Q
    || |||| |||||  |||| || ||||  | ||| || ||||||||||||||| | |||||||||||||||||  |  |||||||||||||||| | | |    
T  36218483 caattgttgaaaaggattctcttgacaaagttttgtttcccaagtccaaaagtgtaagaactattttatttcctgtcgaaggagtgggccttgacaatga 36218582  T
Q  226 aactttgctgaacacatggatatcaagatacaaatacttgtgatat 271  Q
    ||| ||| || | || ||| |||||| ||| ||||||||| |||||    
T  36218583 aacattggtgcatacgtgggtatcaaaatataaatacttgcgatat 36218628  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 35946083 - 35946013
Alignment:
Q  24 tacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatact 94  Q
    ||||||||||||||||||||||| |||| |||||||| | |||||| |||||| ||||||  |||||||||    
T  35946083 tacatgatttgatacatgatcttgctctgtatgttgcaagagaggactttgtaacggtaggctcacatact 35946013  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 36223584 - 36223765
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaaga 118  Q
    |||||| |||||||||||||| |||||| |  | ||||||||||| ||||||||||||  |||||  |||||||||  ||  ||||| |||||  ||||     
T  36223584 caaagtgcatgatttgatacacgatcttgcattgtatgttgcgaaggaggagtttgtaatggtagtctcacatactcagatcataccggaacaagcaagg 36223683  T
Q  119 caagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttccca 200  Q
    ||  || || |||| ||||||  |||||| | |  || ||| |||||||||||||||||| | ||||| ||| |||||||||    
T  36223684 catatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtccaaaagtgtaagaacaattatatttccca 36223765  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35981306 - 35981250
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgt 75  Q
    |||||||||||||||||||||||||||| | ||||||||||  |||||||| |||||    
T  35981306 caaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgt 35981250  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 36002718 - 36002662
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgt 75  Q
    |||||||||||||||||||||||||||| | ||||||||||  |||||||| |||||    
T  36002718 caaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgt 36002662  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35976746 - 35976663
Alignment:
Q  23 gtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 106  Q
    |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35976746 gtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35976663  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35998158 - 35998075
Alignment:
Q  23 gtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 106  Q
    |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35998158 gtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35998075  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 26329555 - 26329686
Alignment:
Q  165 ccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatactt 264  Q
    ||||||| |||||| ||||||||||||| | ||||||  ||||||| ||  | |||||| ||||| |  || |  |||||||||||||||||||||||||    
T  26329555 ccaagtcgaaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatactt 26329654  T
Q  265 gtgatatttaggtttaagagattcttcctttg 296  Q
    | | ||||||| |||||| |||||||| ||||    
T  26329655 gcgctatttagatttaagtgattcttcatttg 26329686  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 18125015 - 18124926
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctga 108  Q
    |||||||||||||||| ||||||||||| |  | |||||||| |||| ||||||| ||| |||||| ||||||| |   |||||||||||    
T  18125015 caaagtacatgatttggtacatgatctttcattgtatgttgctaaagcggagtttctagtggtagactcacatattcaaaatatacctga 18124926  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 18117362 - 18117304
Alignment:
Q  19 caaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtag 77  Q
    ||||||||| |||||| ||||||||||| || | |||||||| ||| ||||||||||||    
T  18117362 caaagtacacgatttggtacatgatcttgctttctatgttgcaaaaaaggagtttgtag 18117304  T

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