View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_high_2 (Length: 594)
Name: NF6040_high_2
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 354 - 576
Target Start/End: Original strand, 8848963 - 8849185
Alignment:
| Q |
354 |
caattttcgcagctctgataacaggattctccctcgcaatcgcttctctaccaaccttcttataatcatacccacaatcatgtcgatcagagtatcgatg |
453 |
Q |
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| T |
8848963 |
caattttcgcagctctgataacaggattctcccttgcaatctcttctctaccaaccttcttataatcatacccacaatcatgtcgatcagagtatcgatg |
8849062 |
T |
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| Q |
454 |
atctgcacaaaacaactccccacatctacatcgaaatccagccaacccaacctttttccgacaaccggagcatctactaacaactctcttcacctcaaca |
553 |
Q |
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| T |
8849063 |
atctgcacaaaacaactccccacatctacatcgaaatccagccaacccaacctttctccgacaaccggagcatctactaacaaccctcttcacctcagaa |
8849162 |
T |
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| Q |
554 |
accgttttttcatcaaccaaatc |
576 |
Q |
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| T |
8849163 |
accgttttttcatcaaccaaatc |
8849185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 8848671 - 8848810
Alignment:
| Q |
51 |
atgatcaaacacataacaattcatcttcttcattctttttctgtcacaaataacaatccctctctctcta---aaacattacacacaacctcttaaaatc |
147 |
Q |
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| T |
8848671 |
atgatcaaacacataacaattcatcttcttcattctttttctgttacaaataacaatccctctctctctctctaaacattacacacaacctcttaaaatc |
8848770 |
T |
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| Q |
148 |
tatcttaaaactaacaattaacatcctatttatatttata |
187 |
Q |
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| T |
8848771 |
tatcttaaaactaacaattaacatcctatttatatttata |
8848810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 8848842 - 8848889
Alignment:
| Q |
227 |
acacgtgtaacccgaacccgatcaaccagaaccgggtctgttgacccg |
274 |
Q |
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| T |
8848842 |
acacgtgtaacccgaacccgatcaaccagaaccgggtctgttgacccg |
8848889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8848608 - 8848636
Alignment:
| Q |
1 |
caacaaattatcatttcaaagttcatact |
29 |
Q |
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| T |
8848608 |
caacaaattatcatttcaaagttcatact |
8848636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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