View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_high_3 (Length: 562)
Name: NF6040_high_3
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 57 - 274
Target Start/End: Original strand, 45126940 - 45127157
Alignment:
| Q |
57 |
gtgtgtgtttttaatgtgcaatcttaatttaattacccgcaaatagatcgaggaaaaagaaattaaggttcttataaataggccctttgtttatgctatg |
156 |
Q |
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| T |
45126940 |
gtgtgtgtttttaatgtgcaatcttaatttaattacccgcaaatagatcgaggaaaaagaaattaaggttcttataaataggccctttgtttatgctatg |
45127039 |
T |
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| Q |
157 |
catttgaggtcccataatggcaacgaatcaaccgtctctttctgattggaattgagcatgatatatactgtcccttcatttggacaacattgatgaagtt |
256 |
Q |
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| T |
45127040 |
catttgaggtcccataatggcaaggaatcaaccgtctctttctgattggaattgagcatgatatatactgtcccttcatttggacaacattgatgaagtt |
45127139 |
T |
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| Q |
257 |
cgttattatctaagctag |
274 |
Q |
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| T |
45127140 |
cgttattatctaagctag |
45127157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 372 - 549
Target Start/End: Original strand, 45127541 - 45127717
Alignment:
| Q |
372 |
cgggcttaattaatggctcattagttcatagttttacaataaagggatggcttgagtggaaacaccaaaataatcttcaaagaattctccctcaaaaatt |
471 |
Q |
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| T |
45127541 |
cgggcttaattaatggctcattagttcatagtta-acaataaagggatggcttgagtggaaacaccaaaataatcttcaaagaattctccctcaaaaatt |
45127639 |
T |
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| Q |
472 |
cttcaaagtattcattcattttggggacccaataattaagattagggttaaatagattcggtccctatgttgtttttg |
549 |
Q |
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| T |
45127640 |
cttcaaagtattcattcattttagggacccaataattaagattagggttaaatagattcggtccctatgttgtttttg |
45127717 |
T |
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