View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_high_4 (Length: 525)
Name: NF6040_high_4
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 503
Target Start/End: Complemental strand, 53184962 - 53184482
Alignment:
| Q |
10 |
attatactacaaagaaaaagaaatgttagaattcaatatcttatactcctcctatacaactaaatctctccaccaaatccacccttactcggactccgtt |
109 |
Q |
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| T |
53184962 |
attatactacaaagaaaaagaaatgttagaattcaatatcttatactcctcctatacaactaaacctctccaccaaatccacccttactcggactccgtt |
53184863 |
T |
|
| Q |
110 |
actattaacgatatccttcacacagatatagatatttgtatcaatcactgaattaaataatcactatggtctatgaatatgatggacccttcagaacccc |
209 |
Q |
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| T |
53184862 |
actattaaccatatccttcacacagatat------ttgtatcaatcactgaattaaataatcactatg-------aatatgatggacccttcagaacccc |
53184776 |
T |
|
| Q |
210 |
ctccaacgaaggttcataccaaacacagtggtacacttatttccaatcttcttagacacattttaataaaccacctcccttagcttacctcatctcccat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53184775 |
ctccaacgaaggttcataccaaacacagtggtacacttatttccaatcttcttagacacattttaataaaccacctcccttagcttacctcatctcccat |
53184676 |
T |
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| Q |
310 |
ttctgtgctataaatatccttccatgnnnnnnnnnatacatgatcaacatgctggttcttgatttccttaattttcgttctcactaacatgtgttctaac |
409 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53184675 |
ttctatgctataaatatccttccatgtttttttttatacatgatcaacatgctggttcttgatttccttaattttcgttctcactaacatgtgttctaac |
53184576 |
T |
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| Q |
410 |
tctaatggatacaaaatgataaatcttttttaaggccataagtcatctatattctcaaggtttgaactttggtcatgaagcatacgaggccctc |
503 |
Q |
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| T |
53184575 |
tctaatggatacaaaatgataaatcttttttaaggccataagtcatctatattctcaaggtttgaactttggtcatgaagcatacgaggccctc |
53184482 |
T |
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