View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6040_high_5 (Length: 464)

Name: NF6040_high_5
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6040_high_5
NF6040_high_5
[»] chr2 (6 HSPs)
chr2 (206-457)||(31160213-31160461)
chr2 (19-85)||(31160031-31160096)
chr2 (19-64)||(12470914-12470959)
chr2 (19-64)||(29968628-29968673)
chr2 (19-64)||(42543455-42543500)
chr2 (19-64)||(44437738-44437783)
[»] chr7 (4 HSPs)
chr7 (19-64)||(34745967-34746012)
chr7 (19-62)||(47155189-47155232)
chr7 (19-64)||(17759493-17759538)
chr7 (19-47)||(30664805-30664833)
[»] chr5 (3 HSPs)
chr5 (19-64)||(28411896-28411941)
chr5 (35-64)||(1525864-1525893)
chr5 (19-64)||(9121095-9121140)
[»] chr1 (6 HSPs)
chr1 (25-65)||(2001149-2001189)
chr1 (25-64)||(50806887-50806926)
chr1 (19-64)||(43240396-43240441)
chr1 (24-64)||(28528575-28528615)
chr1 (17-65)||(39140734-39140782)
chr1 (300-404)||(50126830-50126934)
[»] chr4 (3 HSPs)
chr4 (25-64)||(52227918-52227957)
chr4 (19-65)||(49738567-49738613)
chr4 (19-64)||(31961283-31961328)
[»] chr8 (2 HSPs)
chr8 (20-65)||(37808215-37808260)
chr8 (19-64)||(39953281-39953326)
[»] chr3 (1 HSPs)
chr3 (19-64)||(35033366-35033411)
[»] scaffold0121 (1 HSPs)
scaffold0121 (17-53)||(40627-40663)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 206 - 457
Target Start/End: Original strand, 31160213 - 31160461
Alignment:
Q  206 caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaaaataactaccttggataattacatctcgagggcttccat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  31160213 caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaatataactaccttggaagattacatctcgagggcttccat 31160312  T
Q  306 ctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagagggtagg 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31160313 ctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagagggtaag 31160412  T
Q  406 agaaggtagtggaatcatcatcatcaatgacccagtttccgtgagaataatc 457  Q
    ||||||||||||||||||||||||   ||||||||||||| |||||||||||    
T  31160413 agaaggtagtggaatcatcatcat---tgacccagtttccttgagaataatc 31160461  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31160031 - 31160096
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccataagtcatatcgctcagtcatat 85  Q
    ||||||||||||||  ||||||| ||||||||||||||||| ||||||||||| |||||| ||||||    
T  31160031 ttatctcactaaatt-ggtcggcaacatgaatcaaacaacgtcataagtcataacgctcaatcatat 31160096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 12470914 - 12470959
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| ||||||||| ||||||||||||||| ||||| ||||||||    
T  12470914 ttatcccactaaatggggtcggctacatgaagcaaacgacgccata 12470959  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 29968628 - 29968673
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| ||  |||||||||||||||||||||||||||||    
T  29968628 ttatcccactaagtggagtcggctacatgaatcaaacaacgccata 29968673  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 42543500 - 42543455
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || || |||||||||||||||||||||||||||    
T  42543500 ttatcccactaagtggggccggctacatgaatcaaacaacgccata 42543455  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 44437738 - 44437783
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || |||||||||||||||| |||||||||||||    
T  44437738 ttatcccactaagtggggtcggctacatgaattaaacaacgccata 44437783  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 34746012 - 34745967
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||    
T  34746012 ttatcccactaagtggggtcggctacatgaatcaaacaacgccata 34745967  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 47155189 - 47155232
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgcca 62  Q
    ||||| |||||| || ||||||||||||||||||||||||||||    
T  47155189 ttatcccactaagtggggtcggctacatgaatcaaacaacgcca 47155232  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 17759538 - 17759493
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || |||||||||||||||||||||||| |||||    
T  17759538 ttatcccactaagtggggtcggctacatgaatcaaacaacaccata 17759493  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 30664833 - 30664805
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatg 47  Q
    |||||||||||||||||||||||||||||    
T  30664833 ttatctcactaaatgaggtcggctacatg 30664805  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 28411941 - 28411896
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||    
T  28411941 ttatcccactaagtggggtcggctacatgaatcaaacaacgccata 28411896  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 1525893 - 1525864
Alignment:
Q  35 ggtcggctacatgaatcaaacaacgccata 64  Q
    ||||||||||||||||||||||||||||||    
T  1525893 ggtcggctacatgaatcaaacaacgccata 1525864  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9121095 - 9121140
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  9121095 ttatcccactaagtgaggtcggctacatgaatcaaacgatgccata 9121140  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 2001149 - 2001189
Alignment:
Q  25 cactaaatgaggtcggctacatgaatcaaacaacgccataa 65  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  2001149 cactaagtgaggtctgctacatgaatcaaacaacgccataa 2001189  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 50806926 - 50806887
Alignment:
Q  25 cactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  50806926 cactaaatggggtcggttacatgaatcaaacaacgccata 50806887  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 43240396 - 43240441
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| |||||||||||||||||||||||  ||||||||    
T  43240396 ttatcccactaagtgaggtcggctacatgaatcaaatgacgccata 43240441  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 28528615 - 28528575
Alignment:
Q  24 tcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  28528615 tcactaagtggggtcggctacatgaatcaaacgacgccata 28528575  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 39140782 - 39140734
Alignment:
Q  17 cattatctcactaaatgaggtcggctacatgaatcaaacaacgccataa 65  Q
    ||||||| |||||| || ||||||||||||||||||||  |||||||||    
T  39140782 cattatcccactaagtggggtcggctacatgaatcaaattacgccataa 39140734  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 50126934 - 50126830
Alignment:
Q  300 ttccatctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagag 399  Q
    ||||||||||| |||| |||||||| ||| | ||| |||||||  ||||||| ||| || ||  | || |||||||||||  |||| |||||||| ||||    
T  50126934 ttccatctatatttgagataatcttgatctggtctcccatttctgagacaattaaatccctgcactataaaaggacagtcccttgaggcatcataaagag 50126835  T
Q  400 ggtag 404  Q
    |||||    
T  50126834 ggtag 50126830  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 52227918 - 52227957
Alignment:
Q  25 cactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  52227918 cactaaatgaggtcggctacataaatcaaacgacgccata 52227957  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 49738567 - 49738613
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccataa 65  Q
    ||||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  49738567 ttatcccactaaatggggtcggctacatggatcaaacaccgccataa 49738613  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31961283 - 31961328
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| |||||||||||||||||||||||| ||| ||||    
T  31961283 ttatcccactaagtgaggtcggctacatgaatcaaacgacgtcata 31961328  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 37808215 - 37808260
Alignment:
Q  20 tatctcactaaatgaggtcggctacatgaatcaaacaacgccataa 65  Q
    |||| ||||||||| ||||||||||||||||||||| || ||||||    
T  37808215 tatcccactaaatggggtcggctacatgaatcaaactacaccataa 37808260  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 39953281 - 39953326
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| |||||| || |||||||||||||||||||||||| |||||    
T  39953281 ttatcccactaagtggggtcggctacatgaatcaaacaactccata 39953326  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 35033411 - 35033366
Alignment:
Q  19 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 64  Q
    ||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  35033411 ttatcccactagatgaggtcggctacatggatcaaataacgccata 35033366  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 40627 - 40663
Alignment:
Q  17 cattatctcactaaatgaggtcggctacatgaatcaa 53  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  40627 cattatcccactaaatgagatcggctacatgaatcaa 40663  T

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