View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6040_high_7 (Length: 386)

Name: NF6040_high_7
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6040_high_7
NF6040_high_7
[»] chr2 (4 HSPs)
chr2 (19-386)||(1615943-1616299)
chr2 (19-111)||(18355341-18355434)
chr2 (19-112)||(23349008-23349102)
chr2 (19-111)||(10328920-10329013)
[»] scaffold0096 (1 HSPs)
scaffold0096 (19-112)||(27409-27502)
[»] chr3 (11 HSPs)
chr3 (19-111)||(17681767-17681859)
chr3 (19-111)||(12538664-12538756)
chr3 (324-383)||(40050639-40050698)
chr3 (35-112)||(31685076-31685153)
chr3 (19-111)||(53973314-53973407)
chr3 (27-112)||(37982348-37982434)
chr3 (19-111)||(2549937-2550030)
chr3 (35-112)||(24761943-24762020)
chr3 (35-111)||(24815915-24815991)
chr3 (27-96)||(19882147-19882217)
chr3 (35-111)||(53352806-53352882)
[»] scaffold0035 (1 HSPs)
scaffold0035 (19-113)||(35061-35156)
[»] chr8 (5 HSPs)
chr8 (19-111)||(14678049-14678142)
chr8 (19-111)||(27541587-27541679)
chr8 (21-111)||(31100902-31100993)
chr8 (19-111)||(5657771-5657864)
chr8 (68-111)||(23738657-23738700)
[»] chr6 (6 HSPs)
chr6 (27-112)||(3065697-3065782)
chr6 (19-111)||(10092512-10092605)
chr6 (33-112)||(16246701-16246780)
chr6 (19-96)||(33045459-33045537)
chr6 (33-96)||(30908412-30908475)
chr6 (68-110)||(4660253-4660295)
[»] chr7 (4 HSPs)
chr7 (19-112)||(1262087-1262181)
chr7 (35-112)||(48849852-48849929)
chr7 (19-116)||(43071410-43071508)
chr7 (27-112)||(26910017-26910103)
[»] chr5 (6 HSPs)
chr5 (33-111)||(19085420-19085498)
chr5 (19-111)||(22009556-22009649)
chr5 (19-113)||(9043800-9043895)
chr5 (19-111)||(7473517-7473610)
chr5 (19-110)||(30442575-30442667)
chr5 (27-96)||(26841000-26841070)
[»] chr4 (2 HSPs)
chr4 (19-111)||(29863389-29863482)
chr4 (68-112)||(12506435-12506479)
[»] scaffold0045 (1 HSPs)
scaffold0045 (19-111)||(11662-11755)
[»] scaffold0157 (1 HSPs)
scaffold0157 (68-112)||(13998-14042)
[»] chr1 (1 HSPs)
chr1 (33-107)||(50990911-50990985)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 1615943 - 1616299
Alignment:
Q  19 ccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattgaatac 118  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  1615943 ccaacgatctcccttgtttggagcaaaaaccatttagatttaatggttacaaagtcattaacaatgttaacaaagattggatataaggatgattgaatac 1616042  T
Q  119 tgtaacataacatcgtaaccatgagatccgtctaaccatgatgtacctccttagcctaactcatcaaaacttttatttatnnnnnnnnnnnncatgaata 218  Q
    ||||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||||||||||||            ||||||||    
T  1616043 tgtaacataacatcgtaaccatga-----------ccatgatttacctccttagcctaactcatcaaaacttttatttataaaaaagaaaaacatgaata 1616131  T
Q  219 aataaataaatgacatcctttaatgattgtagttttttaatatttagtatttgtttataaagatcagtttttatactgtttctgaataaatgccctcata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1616132 aataaataaatgacatcctttaatgattgtagttttttaatatttagtatttgtttataaagatcagtttttatactgtttttgaataaatgccctcata 1616231  T
Q  319 tttagtatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattatttatgatga 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1616232 tttagtatttatgaatttatttatcggaaagtccctaaaggactcattgatttgattatttatgatga 1616299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 18355341 - 18355434
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    ||||||||||||||||||| | ||| |||||||||||||||||  | || |||  |||||| ||||||||||||||||| ||||||||||||||    
T  18355341 ccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattaaatataagtatgat 18355434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 23349008 - 23349102
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||||    
T  23349008 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt 23349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 10328920 - 10329013
Alignment:
Q  19 ccaacgacctcccttgtttga-agcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | | | ||||| |||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  10328920 ccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 10329013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 27502 - 27409
Alignment:
Q  19 ccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||||| ||||||||||||| ||| |||||||||||||||||  | || |||| |||||| |||||||||||||||||  ||||||||||||||    
T  27502 ccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgatt 27409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 17681859 - 17681767
Alignment:
Q  19 ccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| || |||||||||| ||| |||||||||||||||||  | || |||| ||||||||||||||||||||||||  |||||||||||||    
T  17681859 ccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaacaaagattagatataagtatgat 17681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 12538664 - 12538756
Alignment:
Q  19 ccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| ||||||||||||| ||| |||||||||||||||||  | || |||| ||||||  || |||||||||||||  |||||||||||||    
T  12538664 ccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagaaaggttaacaaagattagatataagtatgat 12538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 40050698 - 40050639
Alignment:
Q  324 tatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattatttatga 383  Q
    ||||||||||||||||||||| ||||||  ||||||| || |||||||||||||||||||    
T  40050698 tatttatgaatttatttatcgaaaagtcgttaaaggattcattgatttgattatttatga 40050639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 31685153 - 31685076
Alignment:
Q  35 tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||| ||| |||||||||||||||||  | || ||||||||||| ||||||||| |||||||  ||||||||||||||    
T  31685153 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatgatt 31685076  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 53973314 - 53973407
Alignment:
Q  19 ccaacgacctcccttg-tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  53973314 ccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 53973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 37982434 - 37982348
Alignment:
Q  27 ctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    ||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||||    
T  37982434 ctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt 37982348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2550030 - 2549937
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||| ||||||||||||  | || ||||||||||| |||||||||  ||||||  |||||||||||||    
T  2550030 ccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgat 2549937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 24761943 - 24762020
Alignment:
Q  35 tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||| ||| |||||||||||||||||  | || ||||||||||| ||||||||| || ||||  ||||||||||||||    
T  24761943 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgatt 24762020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 24815991 - 24815915
Alignment:
Q  35 tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||| ||| |||||||||||||||||  | || ||||||||||| ||||||||| || ||||  |||||||||||||    
T  24815991 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 24815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 19882147 - 19882217
Alignment:
Q  27 ctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 96  Q
    ||||||||||| | ||| |||||||||||||||||  | ||||||  |||||| |||||||||||||||||    
T  19882147 ctcccttgttttggagccaaaaccatttaggtttagggtttacaatttcattagcaatgttaacaaagatt 19882217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 53352806 - 53352882
Alignment:
Q  35 tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||| ||| |||||| ||||||||||  | || ||||||||||| ||||||||| || ||||  |||||||||||||    
T  53352806 tttggagccaaaaccgtttaggtttagagtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 53352882  T

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Target: scaffold0035 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 35156 - 35061
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg 113  Q
    ||||| ||||||||||||| | ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||||    
T  35156 ccaacaacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgattg 35061  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 14678049 - 14678142
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  14678049 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatgat 14678142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27541587 - 27541679
Alignment:
Q  19 ccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| | ||||||||||| ||| ||| |||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  27541587 ccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 27541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 31100902 - 31100993
Alignment:
Q  21 aacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||| |||||||||||| | ||| |||||||||||||||||    || ||||||||||| |||||||||||||||||  |||||||||||||    
T  31100902 aacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 31100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 5657864 - 5657771
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| ||||| |||||||||||  | || ||||||||||| ||| |||||||||||||  |||||||||||||    
T  5657864 ccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatgat 5657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 23738700 - 23738657
Alignment:
Q  68 caaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    ||||||||||| |||||||||||||||||  |||||||||||||    
T  23738700 caaagtcattagcaatgttaacaaagattagatataagtatgat 23738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 3065782 - 3065697
Alignment:
Q  27 ctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||||||||||| ||| |||||||||||||||||  | || ||||||||||| | |||||||||||||||  ||||||||||||||    
T  3065782 ctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagatataagtatgatt 3065697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 10092605 - 10092512
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||||||||||| ||||  | || |||||||||||||||||||||||||||||  |||||||||||||    
T  10092605 ccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaacaatgttaacaaagattagatataagtatgat 10092512  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 16246780 - 16246701
Alignment:
Q  33 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||||| ||| ||||||||||||| |||  | || ||||||||||| ||||||| |||||||||  ||||||||||||||    
T  16246780 tgtttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgatt 16246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 33045459 - 33045537
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 96  Q
    |||||| |||||||| ||| | ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||    
T  33045459 ccaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagatt 33045537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 30908412 - 30908475
Alignment:
Q  33 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 96  Q
    |||||| ||| |||||||||||| ||||  | || ||||||||||| |||||||||||||||||    
T  30908412 tgtttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagatt 30908475  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 4660253 - 4660295
Alignment:
Q  68 caaagtcattaacaatgttaacaaagattgaatataagtatga 110  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  4660253 caaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 1262181 - 1262087
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||||| | |||||||||| | ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  ||||||||||||||    
T  1262181 ccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 1262087  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 48849852 - 48849929
Alignment:
Q  35 tttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    |||| ||| |||||||||||||||||    |||||||||||||| |||||||||||||||||  ||||||||||||||    
T  48849852 tttggagccaaaaccatttaggtttaggatttacaaagtcattagcaatgttaacaaagattagatataagtatgatt 48849929  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 43071410 - 43071508
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattgaat 116  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||| ||||    
T  43071410 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatagaat 43071508  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 26910017 - 26910103
Alignment:
Q  27 ctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    ||||||||||| | ||| ||| |||||||||||||  | || |||||| |||| |||||||||||||||||  ||||||||||||||    
T  26910017 ctcccttgttttggagccaaatccatttaggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatgatt 26910103  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 19085420 - 19085498
Alignment:
Q  33 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  19085420 tgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat 19085498  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 22009556 - 22009649
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||| |||||| |||||||||||||||||  |||||||||||||    
T  22009556 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatgat 22009649  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9043895 - 9043800
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg 113  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||||    
T  9043895 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgattg 9043800  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 7473517 - 7473610
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  7473517 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 7473610  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 30442575 - 30442667
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatga 110  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||| ||||    
T  30442575 ccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagcatga 30442667  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 26841000 - 26841070
Alignment:
Q  27 ctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 96  Q
    ||||||||||| | ||| |||||||||||||||||  | || |||| |||||| |||||||||||||||||    
T  26841000 ctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagatt 26841070  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 29863389 - 29863482
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||| |||||||||||||||||  | || ||||||||| | |||||||||||||||||  |||||||||||||    
T  29863389 ccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatgat 29863482  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 12506479 - 12506435
Alignment:
Q  68 caaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||    
T  12506479 caaagtcattagcaatgttaacaaagattagatataagtatgatt 12506435  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 11662 - 11755
Alignment:
Q  19 ccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 111  Q
    |||||| |||||||||||| | ||  ||||||| |||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  11662 ccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 11755  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 13998 - 14042
Alignment:
Q  68 caaagtcattaacaatgttaacaaagattgaatataagtatgatt 112  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||    
T  13998 caaagtcattagcaatgttaacaaagattagatataagtatgatt 14042  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 50990985 - 50990911
Alignment:
Q  33 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagta 107  Q
    |||||| ||| |||||||||||||||||  | || |||||| || | |||||||||||||||||  |||||||||    
T  50990985 tgtttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta 50990911  T

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