View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_low_10 (Length: 333)
Name: NF6040_low_10
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 1616300 - 1616600
Alignment:
| Q |
1 |
atgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaaggg |
100 |
Q |
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| T |
1616300 |
atgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaaggg |
1616399 |
T |
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| Q |
101 |
atttgattgataagaattaatgcaccaaactttacttgatgcata---annnnnnnnnnnagggaacttaatacat--atttttaagatttggcctcaaa |
195 |
Q |
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| T |
1616400 |
atttgattgataagaattaatgcaccaaactttacttgatgcataattattttattttttagggaacttaatacataaatttttaagatttggcctcaaa |
1616499 |
T |
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| Q |
196 |
atacttataaaatacaacaaattaagtataagtacctctcnnnnnnnnctaatatgagtaacgtaaaacaagcgtttgtcaacatttttgtcaaataata |
295 |
Q |
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| T |
1616500 |
atacttataaaatacaa-----taagtataagtacctctc-aaaaaaactaatatgagtaacgtaaaacaagcgtttgtcaacatttttgtcaaataata |
1616593 |
T |
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| Q |
296 |
ttcttgg |
302 |
Q |
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| T |
1616594 |
ttcttgg |
1616600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 40050572 - 40050472
Alignment:
| Q |
37 |
aaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatgcaccaaactttact |
136 |
Q |
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| T |
40050572 |
aaaaaattccttttcagaaaaagaaataaaaaccgaattttagaaatctcccgttatacaagggatttgattgagaagaatcaatgcatcaaaatttact |
40050473 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
40050472 |
t |
40050472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 40050475 - 40050421
Alignment:
| Q |
163 |
acttaatacata--tttttaagatttggcctcaaaatacttataaaatacaacaa |
215 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
40050475 |
acttaatacatagatttttaagatttggtctcaaaatacttataaaatacaacaa |
40050421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40050635 - 40050596
Alignment:
| Q |
1 |
atgatacgtttttattgaattacttaatgcttaattaaaa |
40 |
Q |
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| T |
40050635 |
atgatacgtttttattgaattaattaatgcttaattaaaa |
40050596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 40050392 - 40050333
Alignment:
| Q |
246 |
aatatgagtaacgtaaaa---caagcgtttgtcaacatttttgtcaaataatattcttgg |
302 |
Q |
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||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||| |
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| T |
40050392 |
aatatgaataacgtaaaagtacaagcctttgtcaacatttttgtcaaataaaattcttgg |
40050333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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