View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_low_11 (Length: 330)
Name: NF6040_low_11
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 27372261 - 27371932
Alignment:
| Q |
1 |
aagtcaaagtaaaggaatacgtataacctcacatttatatacatagtatatgaatatgattgtaacgtcgcatctccattaattctaacgtttgaacttt |
100 |
Q |
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| T |
27372261 |
aagtcaaagtaaaggaatacgtaaaacctcacgtttatatacacagtatatgaatatgattgtaacgtcgcatctccattaattctaacgtttgaacttt |
27372162 |
T |
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| Q |
101 |
gaagtcaacaatataatgttattttattttgaaatttgaagaaatc-------aacaacatcaaattaggaatagtagtaaaagtttatggtcattcaac |
193 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
27372161 |
gaagtcaacaatatcatgttattttattttgaaatttgaagaaatcaacattcaacaacaccaaattaggaatagtagtaaaagtttatggtcagtcaac |
27372062 |
T |
|
| Q |
194 |
tcaaaagtactctaacacc---acacctttacaaatttacatagtagacccaactaccctttaatttcacgtccatacttcaaataaaattttgtaatgg |
290 |
Q |
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||||||| ||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27372061 |
tcaaaag---tctaacacctcatcacctttacaaatttacctagtacacccacctaccctttaatttcacgtccatacttcaaacaaaattttgtaatgg |
27371965 |
T |
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| Q |
291 |
ctttgtttccctttgtttgttgtcttattgtca |
323 |
Q |
| |
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|| ||| |||||||||||||||||||||||||| |
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| T |
27371964 |
ctctgtatccctttgtttgttgtcttattgtca |
27371932 |
T |
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