View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_low_15 (Length: 276)
Name: NF6040_low_15
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 35980935 - 35981193
Alignment:
| Q |
1 |
aaaactgttaaaagccacagtgaaataaaaagatgatatatatgtatatttttaaataaagccaatggtttctattgtaggtttatgtagacacattggt |
100 |
Q |
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| T |
35980935 |
aaaactgttaaaagccacagtgaaataaaaagatgatatatatgtatatttttaaataaagccaatggtttctattgtaggtttatgtagacacgttggt |
35981034 |
T |
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| Q |
101 |
gaagaaagcatatgataattggatgcacgttattgaatatgatgggaagtctctgctaaattacaatcaggataaaaatttggaacctgctcatcctcag |
200 |
Q |
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| T |
35981035 |
gaagaaagcatatgataattggatgcacgttattgaatatgatgggaagtctctgctaaattacaatcaggataaaaatttggaacctgctcatcctcag |
35981134 |
T |
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| Q |
201 |
gctctcatgggttcccatgagtattcaaacttaatacagcagacttctatccatagttt |
259 |
Q |
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| T |
35981135 |
gctctcatgggttcccatgagtattcaaacttaatacagcagacttctatccatagttt |
35981193 |
T |
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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 2961477 - 2961385
Alignment:
| Q |
77 |
gtaggtttatgtagacacattggtgaagaaagcatatgataattggatgcacgttattgaatatgatgggaagtctctgctaaattacaatca |
169 |
Q |
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||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
2961477 |
gtaggttcatgtggacacattggtgaagaaggcatatgagaattggatgcacgttattgagtatgatggcaagtctctgctaaattacaatca |
2961385 |
T |
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