View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6040_low_6 (Length: 430)
Name: NF6040_low_6
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_low_6 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 5823277 - 5823688
Alignment:
| Q |
1 |
ctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823277 |
ctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggt |
5823376 |
T |
|
| Q |
101 |
tattgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5823377 |
tattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcatctgaatgctat |
5823476 |
T |
|
| Q |
201 |
tttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccacttgacgagtcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823477 |
tttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccacttgacgagtcac |
5823576 |
T |
|
| Q |
301 |
ctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtgatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823577 |
ctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtgatat |
5823676 |
T |
|
| Q |
401 |
tcttcaagtaac |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5823677 |
tcttcaagtaac |
5823688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 5832763 - 5832502
Alignment:
| Q |
27 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
126 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
|
| Q |
127 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgac |
226 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatgac |
5832564 |
T |
|
| Q |
227 |
agaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
288 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5832563 |
agaaccaaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
5832502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 5832466 - 5832354
Alignment:
| Q |
297 |
tcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtg |
396 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||||||| || || | || || |||||||| ||| |||| ||||||| |||||||| |
|
|
| T |
5832466 |
tcacctccaaagctagtagaccttgctgatgtccaaattggtaaattttatgagcttgtaatcacaacttattccggtttttgccgttacagagttggtg |
5832367 |
T |
|
| Q |
397 |
atattcttcaagt |
409 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5832366 |
atattcttcaagt |
5832354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 78088 - 78323
Alignment:
| Q |
45 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
144 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
|
| Q |
145 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttc |
244 |
Q |
| |
|
| ||||||||| |||| ||||||| || |||||||| || |||||||| ||||||||||||||||| || ||| |||| ||| ||||| |
|
|
| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaaccttaatccaatgtgcaaaccatctgaggtttc |
78287 |
T |
|
| Q |
245 |
ttacaccattatgccaaacatgggttactttgaatt |
280 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |
|
|
| T |
78288 |
atacaccatcatgccaaacatggcctactttgaatt |
78323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University