View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6040_low_8 (Length: 384)
Name: NF6040_low_8
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6040_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Complemental strand, 37216220 - 37215843
Alignment:
| Q |
7 |
tccaagaatataaaagaaagaaatagaaactcaaatgatgcatcattatcaacaacactcttaagtatgtccattttgacacaacttgtgagagtgagat |
106 |
Q |
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| T |
37216220 |
tccaaaaatataaaagaaagaaatagaaactcaaatgatgcatcattatcaacaacactcttaagtatgttcattttgacacaacttgtgagagtgagat |
37216121 |
T |
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| Q |
107 |
ttccttttaatgctatttggagaaagaaagaaagaaagtgacaatttggagataagtccaaagaggcaaacaccttgtgtgggttcctactcagtactca |
206 |
Q |
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| T |
37216120 |
ttccttttaatgctatttggagaaagaaagaaagaaagtgacaatttggagataagtccaaagaggcaaacacctagtgtgggttcctactcagtactca |
37216021 |
T |
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| Q |
207 |
tctccatcaataaagatatcattttgttatttacctttatactcattctcacttaaaccttctatatttagcctaacatataacacattaccgtgagttt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37216020 |
tctccatcaataaagatatcattttgttatttacctttatactcactctcacttaaaccttctatatttagcctaacatataacacattactgtgagttt |
37215921 |
T |
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| Q |
307 |
ggtttgtttttcagtatgtgggaatcagaaagtgaaacagcagctggaagggaatatggaggtggagttctcacctca |
384 |
Q |
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| T |
37215920 |
ggtttgtttttcagtatgtgggaatctgaaagtgaaacagcagctggaagggaatatggaggtggagttctcacctca |
37215843 |
T |
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