View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6040_low_9 (Length: 376)

Name: NF6040_low_9
Description: NF6040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6040_low_9
NF6040_low_9
[»] chr1 (1 HSPs)
chr1 (1-361)||(5918254-5918614)
[»] chr6 (20 HSPs)
chr6 (208-353)||(29662716-29662860)
chr6 (1-107)||(29662967-29663073)
chr6 (6-112)||(29718600-29718706)
chr6 (208-350)||(29755645-29755787)
chr6 (208-345)||(28487468-28487605)
chr6 (45-118)||(29671522-29671595)
chr6 (208-353)||(29799872-29800017)
chr6 (209-353)||(29711727-29711871)
chr6 (6-112)||(28487707-28487813)
chr6 (6-112)||(29800119-29800225)
chr6 (208-353)||(29471949-29472094)
chr6 (6-103)||(29689426-29689523)
chr6 (40-118)||(29711958-29712033)
chr6 (6-106)||(29767402-29767502)
chr6 (7-118)||(29471748-29471859)
chr6 (208-359)||(29767140-29767291)
chr6 (208-290)||(29718416-29718498)
chr6 (208-353)||(29671278-29671423)
chr6 (208-306)||(29689217-29689315)
chr6 (50-118)||(29755877-29755945)
[»] chr8 (2 HSPs)
chr8 (6-112)||(12592182-12592288)
chr8 (208-290)||(12592393-12592475)
[»] chr3 (1 HSPs)
chr3 (40-112)||(618689-618761)
[»] scaffold0012 (1 HSPs)
scaffold0012 (45-101)||(208905-208961)
[»] scaffold0007 (2 HSPs)
scaffold0007 (10-112)||(74938-75040)
scaffold0007 (208-290)||(75133-75215)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 5918614 - 5918254
Alignment:
Q  1 agcagagattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918614 agcagagattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtt 5918515  T
Q  101 tctccattgacaagggataattatcaacctaacatgaaagtgttcatcaatggcaaaacatttttctacagggatatcgaggctgactatgagtggtcga 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  5918514 tctccattgacaagggataattatcaacctaacgtgaaagtgttcatcaatggcaaaacatttttctacagggatgtcgaggctgactatgagtggccga 5918415  T
Q  201 tatcgtttcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918414 tatcgtttcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttga 5918315  T
Q  301 ctttgggtttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918314 ctttgggtttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatg 5918254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 29662860 - 29662716
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||||||| |||||||||||||||  |||||||||||||||||| ||||   |||||||||||||||| ||||||||||||  |  |||||||||||     
T  29662860 tcatttacatctttttcatatgcaaactgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttgga 29662761  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagta 353  Q
    ||   ||||||  || ||||||||||||| ||||||||||||||||    
T  29662760 ttcccattcca-gaatgtggaatccatgtattgaaagagaaaagta 29662716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 29663073 - 29662967
Alignment:
Q  1 agcagagattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtt 100  Q
    |||| |||||||| ||||  | ||||||||| || ||  |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29663073 agcaaagattccagagtgattcgaccaccaaggcttggcaggattgtcaatttcattctggttccgtaacaagtttcctgccatagttctttgtgttgtt 29662974  T
Q  101 tctccat 107  Q
    |||||||    
T  29662973 tctccat 29662967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 29718706 - 29718600
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcc 105  Q
    |||||||||||||| | |||||| |||||  |  |||| |||||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  29718706 agattccaaagtggttcgaccacaaatgcgaggcaggattgtcaatttctttctggtttcgtaacaaatttcctgccatagctctttgtgttgtttctcc 29718607  T
Q  106 attgaca 112  Q
    |||||||    
T  29718606 attgaca 29718600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 350
Target Start/End: Complemental strand, 29755787 - 29755645
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||| || ||||   |||||||| ||||||| |||||||||||| ||  |||  ||||||     
T  29755787 tcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttgga 29755688  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaa 350  Q
    ||  |||||| |||||||||||||||||| |||||||||||||    
T  29755687 ttcaaattccttaaaagtggaatccatgtattgaaagagaaaa 29755645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 28487605 - 28487468
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||| ||| |||| ||||||||||  ||||| ||||||||| || |||||  | |||||||||||||| ||||||||||||     ||| |||||||     
T  28487605 tcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttactttgga 28487506  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaaga 345  Q
    ||  ||||||||||||||||||||||||| ||||||||    
T  28487505 ttcaaattccataaaagtggaatccatgtattgaaaga 28487468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 29671595 - 29671522
Alignment:
Q  45 tgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctccattgacaagggat 118  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||| |||||    
T  29671595 tgtcaatttctttctggtttcgtaacaagtttcctgccatagctctctgtgttgtttctccattaacatgggat 29671522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 29800017 - 29799872
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||| ||| |||| ||||||||||  ||||| ||||||||| || |||||  | |||||||||||||| ||||||||||||     ||| |||||||     
T  29800017 tcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttactttgga 29799918  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagta 353  Q
    ||  ||||||||||||||||||||||||| |||||||  |||||||    
T  29799917 ttcaaattccataaaagtggaatccatgtattgaaagctaaaagta 29799872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 29711871 - 29711727
Alignment:
Q  209 catttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttgggt 308  Q
    ||||| ||| |||||||| ||||||| ||||| ||||||||| || | ||   |||||||||||||||| ||||||||||||  |  ||||||||||| |    
T  29711871 catttgcatctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggat 29711772  T
Q  309 ttgaattccataaaagtggaatccatgtgttgaaagagaaaagta 353  Q
    |    ||||| || |||||||||||||| ||||||||||||||||    
T  29711771 tccctttccagaatagtggaatccatgtattgaaagagaaaagta 29711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 28487813 - 28487707
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcc 105  Q
    |||||||| ||||| | ||||||||| ||  |  |||| |||||||||| |||||||||| ||||||||| |||||||||| ||| ||||| ||||||||    
T  28487813 agattccagagtggttcgaccaccaaagcgaggcaggattgtcaatttctttctggtttcttaacaagtttcctgccatagctctctgtgtagtttctcc 28487714  T
Q  106 attgaca 112  Q
    |||||||    
T  28487713 attgaca 28487707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 29800225 - 29800119
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcc 105  Q
    |||||||| ||||| | ||||||||| ||  |  |||| |||||||||| |||||||||| ||||||||| |||||||||| ||| ||||| ||||||||    
T  29800225 agattccagagtggttcgaccaccaaagcgaggcaggattgtcaatttctttctggtttcttaacaagtttcctgccatagctctctgtgtagtttctcc 29800126  T
Q  106 attgaca 112  Q
    |||||||    
T  29800125 attgaca 29800119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 29471949 - 29472094
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||| ||||| |||||||||||||||| |||||||| ||| || || ||||   |||||||||||||||| ||||||||||||  |  ||||||||||||    
T  29471949 tcatctacatctttttcatatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggg 29472048  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagta 353  Q
    ||   ||||    | |||||||||||||| |||||| |||||||||    
T  29472049 ttcccattcatgtatagtggaatccatgtattgaaaaagaaaagta 29472094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 29689523 - 29689426
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttct 103  Q
    |||||||| ||||| ||||||||||||||  |  |||| ||||| |||| ||||||||| |||||||||| ||| |||||| |||  |||||||||||    
T  29689523 agattccagagtggtttgaccaccaatgcgaggcaggaatgtcagtttctttctggttttgtaacaagtttccttccatagctctcggtgttgtttct 29689426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 29712033 - 29711958
Alignment:
Q  40 aggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctccattgacaagggat 118  Q
    |||| |||||||||| |||||||||||||||||||| |||| ||||| ||   |||||||||||||||| ||| |||||    
T  29712033 aggattgtcaatttccttctggtttcgtaacaagtttcctgacatagctc---gtgttgtttctccattcacatgggat 29711958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 29767502 - 29767402
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcc 105  Q
    |||||||| ||||| | ||||||||||||  |  ||||  ||||||||| ||||||||| ||  |||||| |||||||||| ||| ||||||||||||||    
T  29767502 agattccagagtggttcgaccaccaatgcgaggcaggaaagtcaatttctttctggttttgtggcaagtttcctgccatagctctctgtgttgtttctcc 29767403  T
Q  106 a 106  Q
    |    
T  29767402 a 29767402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 29471748 - 29471859
Alignment:
Q  7 gattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcca 106  Q
    ||||||| ||||| | ||||| |||||| ||  |||| |||| ||||| ||||||||  | |||||||| |||| ||||| ||| |||||||||||||||    
T  29471748 gattccagagtggttcgaccatcaatgcttggcaggattgtctatttctttctggttcaggaacaagtttcctgtcatagctctctgtgttgtttctcca 29471847  T
Q  107 ttgacaagggat 118  Q
    | |||| |||||    
T  29471848 tcgacatgggat 29471859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 29767291 - 29767140
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||| ||| |||||||||||||||| ||| | ||||||||| || ||||    ||||||||||||||| | ||||||||||  |  |||||||||||     
T  29767291 tcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgactttgga 29767192  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatga 359  Q
    ||   ||||      |||||||||||||| ||||||||||||||||| ||||    
T  29767191 ttcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatga 29767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 29718498 - 29718416
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg 290  Q
    |||||| ||| |||||||||||||||  || || ||||||||| || ||||   |||||||||||||||| ||||||||||||    
T  29718498 tcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatg 29718416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 29671423 - 29671278
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 307  Q
    |||||| ||| ||||||||||| |||| ||||| || |||||| || ||||   || |||||| ||||||  |||||||||||  |  ||||| |||||     
T  29671423 tcatttgcatctttttcatatgaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagaggttgattttgga 29671324  T
Q  308 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagta 353  Q
    ||   |||||| ||||||||||| ||||| | ||||||||||||||    
T  29671323 ttaccattccagaaaagtggaattcatgtatcgaaagagaaaagta 29671278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 29689315 - 29689217
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttgg 306  Q
    |||||| ||| |||||||||||||| | ||| | ||||||| | || |||||  |||||||||||||||| | ||||||||||  |  |||||||||||    
T  29689315 tcatttgcatctttttcatatgcaagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttgg 29689217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 29755945 - 29755877
Alignment:
Q  50 atttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctccattgacaagggat 118  Q
    ||||| || ||||||||||||||||| |||| ||||| ||| | |||| |||||||||| ||| |||||    
T  29755945 atttctttttggtttcgtaacaagtttcctgtcatagctctctatgttctttctccatttacatgggat 29755877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 12592182 - 12592288
Alignment:
Q  6 agattccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctcc 105  Q
    |||||||| ||||| | |||||| |||||  |  |||| |||||||||| || ||||||||||||||||| ||  |||||||||||||||||||||||||    
T  12592182 agattccagagtggttcgaccacaaatgctcggcaggattgtcaatttctttttggtttcgtaacaagtttccctccatagttctttgtgttgtttctcc 12592281  T
Q  106 attgaca 112  Q
    |||||||    
T  12592282 attgaca 12592288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 12592393 - 12592475
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg 290  Q
    |||||| ||| |||||||||||||||| || || ||||||||| || ||||   |||||||||||||||| ||||||||||||    
T  12592393 tcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatg 12592475  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 618689 - 618761
Alignment:
Q  40 aggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctccattgaca 112  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||   ||| |||||||||||||||||||||    
T  618689 aggattgtcaatttctttctggtttcgtaacaagtttcctgccattactctctgtgttgtttctccattgaca 618761  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 208961 - 208905
Alignment:
Q  45 tgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgttt 101  Q
    ||||| |||| |||||||||||||||||||| |||||||||| ||| ||||||||||    
T  208961 tgtcattttctttctggtttcgtaacaagtttcctgccatagctctctgtgttgttt 208905  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 74938 - 75040
Alignment:
Q  10 tccaaagtggattgaccaccaatgcatgcaaggactgtcaatttcattctggtttcgtaacaagttccctgccatagttctttgtgttgtttctccattg 109  Q
    |||| ||||| | ||||||||||||  |  |||| |||||||||| ||||| ||| | || || || |||||||||||||| |||||||| |||||||||    
T  74938 tccagagtggttcgaccaccaatgctcgggaggattgtcaatttctttctgctttagaaataaatttcctgccatagttctctgtgttgtatctccattg 75037  T
Q  110 aca 112  Q
    |||    
T  75038 aca 75040  T

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Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 75133 - 75215
Alignment:
Q  208 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg 290  Q
    ||||||| || ||||||||||| |||  ||||||||||| |||  | ||||   |||||||||||||||| ||||||||||||    
T  75133 tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatg 75215  T

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