View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6041_high_10 (Length: 238)
Name: NF6041_high_10
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12000028 - 12000249
Alignment:
| Q |
1 |
cataatttattagggaaattctaaatagattcatgaactataatttattagtatctgtaattgtacttttgaacttgttaataatttgcaatttcgttta |
100 |
Q |
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| T |
12000028 |
cataatttattagggaaattctaaatagattcatgaactataatttattagtatctgtaattgtacttttgaacttgtaaataatttgcaatttcgttta |
12000127 |
T |
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| Q |
101 |
tgaatttttaaatgatttttgtaataaagtatctaaacttgtcaataaacatgaaccattatagaatatctaaactaaatacaaactttttagtttaaga |
200 |
Q |
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| T |
12000128 |
tgaatttttaaatgatttttgtaataaagtatctaaacttgtcaataaacatgaaccattatagaatatctaaactaaatacaaactttttagtttaaga |
12000227 |
T |
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| Q |
201 |
aaccgtttaaaaaattatcttt |
222 |
Q |
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|||||||||||||||| ||||| |
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| T |
12000228 |
aaccgtttaaaaaattctcttt |
12000249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12244940 - 12244895
Alignment:
| Q |
1 |
cataatttattagggaaattctaaatagattcatgaactataattt |
46 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12244940 |
cataatttattagggaaattctaaatagatccatgaactataattt |
12244895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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