View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6041_high_4 (Length: 404)

Name: NF6041_high_4
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6041_high_4
NF6041_high_4
[»] chr6 (7 HSPs)
chr6 (98-385)||(20023818-20024105)
chr6 (98-387)||(18764384-18764676)
chr6 (1-51)||(20023306-20023356)
chr6 (314-387)||(19379050-19379123)
chr6 (348-387)||(21391542-21391581)
chr6 (314-356)||(14601781-14601823)
chr6 (52-89)||(20023268-20023305)
[»] scaffold0039 (1 HSPs)
scaffold0039 (314-387)||(80624-80697)
[»] chr8 (1 HSPs)
chr8 (314-387)||(41985514-41985587)
[»] chr5 (1 HSPs)
chr5 (210-258)||(21113277-21113326)
[»] chr3 (2 HSPs)
chr3 (210-258)||(23218689-23218738)
chr3 (207-258)||(46124595-46124647)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 98 - 385
Target Start/End: Original strand, 20023818 - 20024105
Alignment:
Q  98 aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20023818 aatgttatactcacaatgcatagaaatttatctcatacaattatattcaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 20023917  T
Q  198 caaggaatgaatagtgagagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgccctcgaattcgattaatga 297  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  20023918 caaggaatgaatagtgcgagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgcccccgaattcaattaaaga 20024017  T
Q  298 taacatgaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaa 385  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20024018 taatatgaagaggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaa 20024105  T

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Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 98 - 387
Target Start/End: Original strand, 18764384 - 18764676
Alignment:
Q  98 aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  18764384 aatgttatactcacaatgcatagaaatttatctcatataattatatccaatttcaaatatatcttcaaattttaaaaagtttaggcatgctttaaatgat 18764483  T
Q  198 caaggaatgaatagtgagagtg--atatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgccctcgaattc-gattaa 294  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||  | | ||  ||||| | ||||||    
T  18764484 caaggaatcaatagtgagagtgatatatgttcattgaaatgatcatgaggtcttataattatttggaaaatgataacgattacctccgaatactgattaa 18764583  T
Q  295 tgataacatgaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 387  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18764584 tgataacataaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgataaaaatt 18764676  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20023306 - 20023356
Alignment:
Q  1 tgttctactagaaaatggtcgttgttcgcagaaggaaggggtacactattc 51  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20023306 tgttctactagaaaatggtcgttgttcgcagaaggaaggagtacactattc 20023356  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 19379050 - 19379123
Alignment:
Q  314 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 387  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  19379050 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 19379123  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 21391542 - 21391581
Alignment:
Q  348 catattccagtttcaatttcacggcttcatgatagaaatt 387  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  21391542 catattccagtttcaatttcacggcttcaggatagaaatt 21391581  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 14601781 - 14601823
Alignment:
Q  314 aggttgaaattgtggatctcttaagaattttcttcatattcca 356  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  14601781 aggttgaaattgtggatctcttatgaattttcttcaaattcca 14601823  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 20023268 - 20023305
Alignment:
Q  52 attgtttgtttatatatatcatgcttcaaatacttatt 89  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  20023268 attgattgtttatatatatcatgcttcaaatatttatt 20023305  T

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Target: scaffold0039 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 80624 - 80697
Alignment:
Q  314 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 387  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  80624 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 80697  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 41985514 - 41985587
Alignment:
Q  314 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 387  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  41985514 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 41985587  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 21113326 - 21113277
Alignment:
Q  210 agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 258  Q
    |||||| |||| |||||||||||||||||||| |||||| ||||||||||    
T  21113326 agtgagtgtgagatgttcattgaaatgatcatcgaggtcctataattatt 21113277  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 23218738 - 23218689
Alignment:
Q  210 agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 258  Q
    ||||||||||| |||| |||| |||||||||| |||||||||||||||||    
T  23218738 agtgagagtgagatgtccattcaaatgatcatcgaggtcttataattatt 23218689  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 46124647 - 46124595
Alignment:
Q  207 aatagtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 258  Q
    ||||||||| |||| ||||||||  |||||||||| |||||||||||||||||    
T  46124647 aatagtgagtgtgagatgttcatcaaaatgatcatcgaggtcttataattatt 46124595  T

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