View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6041_high_5 (Length: 400)
Name: NF6041_high_5
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 34 - 381
Target Start/End: Original strand, 1109351 - 1109698
Alignment:
| Q |
34 |
aaatgtggaggagtctcacttggtgctgggatgcaccattacgcagcagatggaacttctggtcttcacttcatcaatacatggttagatgtaactcgtg |
133 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1109351 |
aaatgtgaaggagtctcacttggtgctgggatgcaccattacatagcagatggaacttctggtcttcacttcatcaatatatggttagatgtaactcgtg |
1109450 |
T |
|
| Q |
134 |
gcctagatgtttccattccaccattcattgacaggacagtactccatgctcgcgatccgccacgacccattttcgaccacattgaatacaaacctccacc |
233 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1109451 |
gcctagatgtttccattccaccattcattgaaaggacagtaccccgtgcttgcgatccgccacgacccattttcgaccacatcgaatacaaacctccacc |
1109550 |
T |
|
| Q |
234 |
atccatgcagactcctgaaaagcctccaaaacctggctttgagagagaatgcagcagtgttgatttttaaattgtctcgcgaacaaatcaacaacttgaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
1109551 |
atccatgcagactcctgaaaagcctccaaaacctggctttgagagagaatgcagcagtgtcgatttttaaattttctcgcgaacaaatcaacaacttgaa |
1109650 |
T |
|
| Q |
334 |
agttaagtccaaagaagttgacaacacagtcaactacacctcttatga |
381 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1109651 |
agttaagtccaaagaagttgacaacacaatcaactacacctcttatga |
1109698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 34 - 381
Target Start/End: Original strand, 1129925 - 1130268
Alignment:
| Q |
34 |
aaatgtggaggagtctcacttggtgctgggatgcaccattacgcagcagatggaacttctggtcttcacttcatcaatacatggttagatgtaactcgtg |
133 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||| | | |||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||| |
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| T |
1129925 |
aaatgtggaggagtctcacttggtgttggtatgcaacatcatgtagcagatggagcttctggtcttcatttcatcaatacatggtcagatgtagctcgtg |
1130024 |
T |
|
| Q |
134 |
gcctagatgtttccattccaccattcattgacaggacagtactccatgctcgcgatccgccacgacccattttcgaccacattgaatacaaacctccacc |
233 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||| |||||| ||| |||||||| || ||||| ||||||| ||||| |||||||| |||||||| |
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| T |
1130025 |
gcctagacgtttccatgccaccattcattgaccggacactactccgtgcccgcgatcctccccgacctgttttcgatcacatcgaatacaagcctccacc |
1130124 |
T |
|
| Q |
234 |
atccatgcagactcctgaaaagcctccaaaacctggctttgagagagaatgcagcagtgttgatttttaaattgtctcgcgaacaaatcaacaacttgaa |
333 |
Q |
| |
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||| ||| |||||| | || | || ||||||| |||| ||| ||||||||| | |||||| |||||| ||||||||||| |||||| ||||| |
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| T |
1130125 |
atcaatgaagactcatcaacaaccaacaaaaccaggct----cagatggtgcagcagtttcgattttcaaattgactcgcgaacaactcaacacattgaa |
1130220 |
T |
|
| Q |
334 |
agttaagtccaaagaagttgacaacacagtcaactacacctcttatga |
381 |
Q |
| |
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|| |||||||||||||| | ||||||| || |||||| |||||||| |
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| T |
1130221 |
agctaagtccaaagaagccggcaacacaatccactacagttcttatga |
1130268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 31965937 - 31965731
Alignment:
| Q |
34 |
aaatgtggaggagtctcacttggtgctgggatgcaccattacgcagcagatggaacttctggtcttcacttcatcaatacatggttagatgtaactcgtg |
133 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | ||| |||||| |||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
31965937 |
aaatgtggaggagtctcacttggtgttgggatgcaccattatgtagccgatggagcttctgcttttcacttcatcaatacatggtcagatgtaactcgtg |
31965838 |
T |
|
| Q |
134 |
gcctagatgtttccattccaccattcattgacaggacagtactccatgctcgcgatccgccacgacccattttcgaccacattgaatacaaacctccacc |
233 |
Q |
| |
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| ||||||| |||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||| ||||| || ||| |||||| |||| || |||| |
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| T |
31965837 |
gtctagatgcttccatcccaccatttattgatcggacactactccatgcccgcgatccgccacgaccaatttttgatcacgttgaattcaaatcttcacc |
31965738 |
T |
|
| Q |
234 |
atccatg |
240 |
Q |
| |
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||||||| |
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| T |
31965737 |
atccatg |
31965731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 381
Target Start/End: Complemental strand, 31965679 - 31965600
Alignment:
| Q |
302 |
aaattgtctcgcgaacaaatcaacaacttgaaagttaagtccaaagaagttgacaacacagtcaactacacctcttatga |
381 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
31965679 |
aaattgtctcgcgaacaactcaataagttgaaagataagtccaaagaagttggcaacacaatcaactacaccacttatga |
31965600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 27357164 - 27357000
Alignment:
| Q |
78 |
agcagatggaacttctggtcttcacttcatcaatacatggttagatgtaactcgtggcctagatgtttccattccaccattcattgacaggacagtactc |
177 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| ||||| ||||||| | | ||| ||||| |
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| T |
27357164 |
agcagatggagcatctggtcttcacttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
27357065 |
T |
|
| Q |
178 |
catgctcgcgatccgccacgacccattttcgaccacattgaatacaaacctccaccatccatgca |
242 |
Q |
| |
|
|||||||| ||||| || ||||| |||| || |||||||||||||| ||||||||||| ||||| |
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| T |
27357064 |
catgctcgtgatccacctcgacctgtttttgatcacattgaatacaagcctccaccatcaatgca |
27357000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 45409999 - 45410163
Alignment:
| Q |
78 |
agcagatggaacttctggtcttcacttcatcaatacatggttagatgtaactcgtggcctagatgtttccattccaccattcattgacaggacagtactc |
177 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| ||||| ||||||| | | ||| ||||| |
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| T |
45409999 |
agcagatggagcatctggtcttcacttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
45410098 |
T |
|
| Q |
178 |
catgctcgcgatccgccacgacccattttcgaccacattgaatacaaacctccaccatccatgca |
242 |
Q |
| |
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|||||||| ||||| || ||||| |||| || |||||||||||||| ||||||||||| ||||| |
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| T |
45410099 |
catgctcgtgatccacctcgacctgtttttgatcacattgaatacaagcctccaccatcaatgca |
45410163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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