View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6041_high_6 (Length: 336)
Name: NF6041_high_6
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 6000445 - 6000234
Alignment:
| Q |
106 |
tcaaaacatacatagacgactgatctctaaacatggttataaaatcagtcattcaatttattctcatctatttctagatctatagatatgtgtcacttgt |
205 |
Q |
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| T |
6000445 |
tcaaaacatacatagacaactgatctctaaacatggttataaaatcagtcactcaatttattctcatctatttctagatctatagatatgtgtcactttt |
6000346 |
T |
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| Q |
206 |
taagtaattaacttgtattacaatataccacggcgttctctagcaccaccccaacgcctcggagcaacaccatccatctccatttgttgggtacgctctc |
305 |
Q |
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| T |
6000345 |
taagtaattaacttgtattacaatataccatggcattctctagcaccaccccgacgcctcggagcaacaccatccacctccatttgttgggtacgctctc |
6000246 |
T |
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| Q |
306 |
tcttacggaaag |
317 |
Q |
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| T |
6000245 |
tcctacggaaag |
6000234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6000581 - 6000475
Alignment:
| Q |
1 |
ttggcgcaaaggttgtgtcattgaagactagattctatagcaatatcgttatacgtatagaaagaataaagaattctcccataccaattaagtatcactg |
100 |
Q |
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| T |
6000581 |
ttggcgcaaaggttgtgtcattgaagactagattctatagcaatatcgttattcgtatagaaagaaaaaagaattctcccataccaattaagtatcacag |
6000482 |
T |
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| Q |
101 |
cgtaatc |
107 |
Q |
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| T |
6000481 |
cgtaatc |
6000475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 30740935 - 30740867
Alignment:
| Q |
239 |
cgttctctagcaccaccccaacgcctcggagcaacaccatccatctccatttgttgggtacgctctctc |
307 |
Q |
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| T |
30740935 |
cgttctctggcaccaccctgacgcctcggaacaacaccaccctcctccatccattgggtacgctctctc |
30740867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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