View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6041_high_9 (Length: 241)
Name: NF6041_high_9
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 44520055 - 44519841
Alignment:
| Q |
12 |
caaaggattacctgagtgtcattatgaaaaccatcacctctggcaccaaaatcagtgatggacagaaaccgtctggatctggttcgggtt------cggg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44520055 |
caaaggattacctgagtgtcattatgaaaaccatcacctctggcaccaaaatcagcgatggacagaaaccgtctggatctggttcgggttcgggttcggg |
44519956 |
T |
|
| Q |
106 |
atgacccggaacgtgggagttggataatagagtcaattctttgtggttgtgattgtgattgtgcttgtgcatggtagatgagaaaaggagtaacaataat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44519955 |
atgacccggaacgtgggagttggataatagagtcaattc------cttgtgattgtgattgtgcttgtgcatggtagatgagtaaaggagtaacaataat |
44519862 |
T |
|
| Q |
206 |
aataataacaatgatatatat |
226 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44519861 |
aataataacaatgatatatat |
44519841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 46964595 - 46964661
Alignment:
| Q |
36 |
tgaaaaccatcacctctggcaccaaaatcagtgatggacagaaaccgtctggatctggttcgggttc |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |||| ||| ||| ||||||||| ||||| |
|
|
| T |
46964595 |
tgaaaaccatcacctatggcaccaaagtcagtgatggaaagaacccgcctgaatctggttctggttc |
46964661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 16934880 - 16934916
Alignment:
| Q |
164 |
ttgtgcttgtgcatggtagatgagaaaaggagtaaca |
200 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
16934880 |
ttgtgcttgtgcatggtaggtgagtaaaggagtaaca |
16934916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University