View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6041_low_1 (Length: 869)
Name: NF6041_low_1
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 17 - 788
Target Start/End: Original strand, 26595186 - 26595947
Alignment:
| Q |
17 |
atatccaaaaatatcatcatatatagactataagaataggagaataattaattatccaaacattaatatcccatattcggcttttaattatatgagtttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26595186 |
atatccaaaaatatcatcatatatagactataagaataggagaataattaattatccaaacattaatatcccatattcgacttttaattatatgagtttt |
26595285 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnnnnnngcattggttcttgtccattaattctacttagatacgttgaacaaatttcttttctttttgagcatcacgaatgtaaaataat |
216 |
Q |
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| T |
26595286 |
tatatatata--------gcattggttcttgtccattaattctacttacatacgttgaacaaatttcgtttctttttgagcatcacgaatgtaaaataat |
26595377 |
T |
|
| Q |
217 |
ttgtcatatatacccaagcatatttcttaactatgtattccatctgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacag |
316 |
Q |
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| T |
26595378 |
tggtcatatatacccaagcatatttcttaactatgtattccaactgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacag |
26595477 |
T |
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| Q |
317 |
aaagaaggattaagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgagcatctta |
416 |
Q |
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| T |
26595478 |
aaagaaggattaagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgagcatctta |
26595577 |
T |
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| Q |
417 |
gtttttatgtaaaattgacaaacttaaaggtttaattgttatataaagatatttatgcaaattagactagctagctagacttaattcaattggtggagct |
516 |
Q |
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| T |
26595578 |
gtttttatgtaaaattgacaaacttaaaggtttaattgttatataaagatatttatgcaaattagactagctagctagacttaattcaattggtggagct |
26595677 |
T |
|
| Q |
517 |
tgtgacaagatcaaggtttttggaatcaattctaaaccgctgaactttgtctaattgtttaattaaactgtgga--nnnnnnnnnctttcttaaactgtg |
614 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26595678 |
tgtgacgagatcaaggtttttggaatcaattctaaaccgttgaactttgtctaattgtttaattaaactgtggatttttttttttctttcttaaactgtg |
26595777 |
T |
|
| Q |
615 |
gaaattattgagaatatatccgattaggtgcatcactggttttgtcgacatcgttcacacnnnnnnnnnnnnnnnnnnnntattcattattgtattctat |
714 |
Q |
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| T |
26595778 |
gaaattattgagaatatatccgattaggtgcatcactggttttgtcgacatcgttcacac----aaaaaaagttaaaaaatattcattattgtattctat |
26595873 |
T |
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| Q |
715 |
cttgcatcacattttatccactttcatgataaaaatatgactaaattaatcttttaatctcttagctaagtaat |
788 |
Q |
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| T |
26595874 |
cttgcatcacattttatccactttcatgataaaaataagactaaattaatcttttaatctcttagctaagtaat |
26595947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 673
Target Start/End: Original strand, 26609639 - 26609706
Alignment:
| Q |
605 |
ttaaactgtggaaattattgagaatatatccgattaggtgcatcactggttttgtcgacatcgttcaca |
673 |
Q |
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| T |
26609639 |
ttaaactgtggaaattatcgagaatatatccgtttacgtgcatgactgg-tttatcgatatcgttcaca |
26609706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 673
Target Start/End: Original strand, 26601636 - 26601702
Alignment:
| Q |
605 |
ttaaactgtggaaattattgagaatatatccgattaggtgcatcactggttttgtcgacatcgttcaca |
673 |
Q |
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||||||||||||||| |||||||||||||||| ||| |||||||||| | || ||||||||||||||| |
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| T |
26601636 |
ttaaactgtggaaatcattgagaatatatccg-ttacgtgcatcactag-ttcatcgacatcgttcaca |
26601702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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