View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6041_low_7 (Length: 321)
Name: NF6041_low_7
Description: NF6041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6041_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 11571131 - 11571296
Alignment:
| Q |
31 |
aggtagaacttcttcgaggagacgcggttctgctagacagcagagtatggatgctgatgagttcatgaatttgttgcacggttcggatccagtgaaagtg |
130 |
Q |
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| T |
11571131 |
aggtagaacttcttcgaggagacgcggttctgctagacagcagagtatggatgctgatgagttcatgaatttgttgcacggttcggatccagtgaaagtg |
11571230 |
T |
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| Q |
131 |
gagcttaatcggcttgagaatgaagttcgaggtgcaaaaatgttgctcgatccgatgagtttttca |
196 |
Q |
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| T |
11571231 |
gagcttaatcggcttgagaatgaagttcgaggtgtgaaaatgttgctcgatccgaagagtttttca |
11571296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 11571360 - 11571421
Alignment:
| Q |
260 |
agataaggatagagaattatcggaagcacaagctgagattaaagcgttgaggcattctgaac |
321 |
Q |
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| T |
11571360 |
agataaggatagagaattatcggaagcacaagctgagattaaagcgttgaggcattctgaac |
11571421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 7514011 - 7514166
Alignment:
| Q |
39 |
cttcttcgaggagacgcggttctgctagacagcagagtatggatgctgatgagttcatgaatttgttgcacggttcggatccagtgaaagtggagcttaa |
138 |
Q |
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| T |
7514011 |
cttcttctcggagacgcggctccgcgaggcaaccgagtatggatgctgatgagttcatgaatctgttgcacggttcggatccagtgaaggttgagcttaa |
7514110 |
T |
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| Q |
139 |
tcggcttgagaatgaagttcgaggtgcaaaaatgttgctcgatccgatgagttttt |
194 |
Q |
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| T |
7514111 |
tcggcttgagaatgaagttcgaggtgagaaaatgctgctcgatccgaacagttttt |
7514166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 44452775 - 44452879
Alignment:
| Q |
78 |
tggatgctgatgagttcatgaatttgttgcacggttcggatccagtgaaagtggagcttaatcggcttgagaatgaagttcgaggtgcaaaaatgttgct |
177 |
Q |
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| T |
44452775 |
tggatgcggatgagttcatgaacttgcttcatggttccgatccagtgaaattggagcttaatcgacttgagaatgatgttagaggtgtgaaaatgtagtt |
44452874 |
T |
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| Q |
178 |
cgatc |
182 |
Q |
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| T |
44452875 |
cgatc |
44452879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 7514227 - 7514288
Alignment:
| Q |
260 |
agataaggatagagaattatcggaagcacaagctgagattaaagcgttgaggcattctgaac |
321 |
Q |
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| T |
7514227 |
agataaggatagagaattatcagaagcacaagctgagatcaaagcgttgagacactctgaac |
7514288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 44452943 - 44452992
Alignment:
| Q |
260 |
agataaggatagagaattatcggaagcacaagctgagattaaagcgttga |
309 |
Q |
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| T |
44452943 |
agataaggatagagaattatcagaagcacaagcagagatcaaagcgttga |
44452992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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