View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6042_high_10 (Length: 244)
Name: NF6042_high_10
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43489529 - 43489761
Alignment:
| Q |
1 |
aataaggtgatcaatgcatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcatagttat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43489529 |
aataaggtgatcaatgtatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcatagatat |
43489628 |
T |
|
| Q |
101 |
atggtctaagccctaaggtcatgtttgaacaacaccttaattaagtgtctatataattgcttgtgtataaataatttctagttcaaaatataaaataaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43489629 |
atggtctaagccctaaggtcatgtttgaataacaccttaattaagtgtctatataattgcttgtgtataaataatttctagttcaaaatataaaataaag |
43489728 |
T |
|
| Q |
201 |
tcaaatttgtttgtataaattataagttgtttt |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
43489729 |
tcaaatttgtttgtataaattataagctgtttt |
43489761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 54325178 - 54325124
Alignment:
| Q |
151 |
atataattgcttgtgtataaataatttctagttcaaaatataaaataaagtcaaa |
205 |
Q |
| |
|
|||||| |||||||||||||| ||||||| | ||||| |||||||||||||||| |
|
|
| T |
54325178 |
atataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaa |
54325124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 6981436 - 6981497
Alignment:
| Q |
166 |
tataaataatttctagttcaaaatataaaataaagtcaaatttgtttg-tataaattataag |
226 |
Q |
| |
|
||||||| ||||||| ||||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6981436 |
tataaattatttctataacaaaaaataaaacaaagtcaaatttgtttgatataaattataag |
6981497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University