View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_high_2 (Length: 581)
Name: NF6042_high_2
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 14 - 563
Target Start/End: Complemental strand, 49444643 - 49444090
Alignment:
| Q |
14 |
tactgctccacaaaatgcaatagatgcatgatcttttactctttttgcaatggaagtttgtaatctttgatccacttgatagagaaatttaatacccagg |
113 |
Q |
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| T |
49444643 |
tactgctccacaaaatgcaatagatgcatgatcttttactctttttgcaatggaagtttgtaatctttgatccacttgatagagaaatttaatacccagg |
49444544 |
T |
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| Q |
114 |
cataaggtaagcccaggccacgccacgccacgccacgccaagcc----gatgtgtctgtttaaagggtctaatatcccaagagataaggccatggtattg |
209 |
Q |
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| T |
49444543 |
cataaggtaagcccatgccatgccacgccacgccacgccaagccacatgatgtgtctgtttaaagggtctaatatcccaagaggtaaggccatggtatta |
49444444 |
T |
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| Q |
210 |
gcatcctggtggagggattgatttgttctcgtggtactgttaggacaatgtttattccctttactgttgactttactattggttggttgtgttcataatc |
309 |
Q |
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| T |
49444443 |
gcatcctggtggagggattgatttgttctcgtggtactgttaggacaatgtttattccctttactgttgactttactattggttggttgtgttcataatc |
49444344 |
T |
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| Q |
310 |
gttgctgtcaaaatagatgtatagtatattctggtttgtgatataatggtttgatgaaacaagtcaatactaaggtattatttttcctgtttgcgcagca |
409 |
Q |
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| T |
49444343 |
gatgctgtcaaaatagatgtatagtatattctggtttgtgatataatggtttgatgaaacaagtcaatactaaggtattatttttcctgtttgcgcagca |
49444244 |
T |
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| Q |
410 |
gccaggccataacttgtgatttaatttaattttcttcctgccttgataaactgataaacaggaagtcggtggtgtttatcatgagttccacaactgaaat |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49444243 |
gccaggccataacttgtgatttaatttaattttcttcctgccttgataaactgataaacaggaagtcggtggtgtttatcatgagttccacaactaaaat |
49444144 |
T |
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| Q |
510 |
ttttatggttcttggcattaaaaagaaagacatgaaatttctacttggtttttt |
563 |
Q |
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| T |
49444143 |
ttttatggttcttggcattaaaaagaaagacatgaaatttctacttggtttttt |
49444090 |
T |
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