View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_high_3 (Length: 416)
Name: NF6042_high_3
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 7552514 - 7552913
Alignment:
| Q |
11 |
cataggacaagtagtttaccactggttttttcaataacaaatataaaggcatttgtcatatgcttcatcttttgttttattatgctgcatta---tgata |
107 |
Q |
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| T |
7552514 |
cataggacaagtagtttaccactggttttttcaataacaaatataaaggcatttgtcatatgcttcatcttttgttttattatgctgcattattatgata |
7552613 |
T |
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| Q |
108 |
tatatgacaggcacaaggcattaaattattcaatttcagggtccatttgttactggatcttcttgcatgaaagaaggcacaattgattcactaaggtaaa |
207 |
Q |
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| T |
7552614 |
tatatgacaggcacaaggcattaaattattcaatttcagggtccatttgttactggatcttcttgcatgaaagaaggcacaattgattcactaaggtaaa |
7552713 |
T |
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| Q |
208 |
atattgttcttatttcataataaagaaatgaataatttcaaatacaacctgaagcaatactctca----ttcgtgtatcttcgtgttgcagaattgctcc |
303 |
Q |
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| T |
7552714 |
atattgttcttatttcttaataaacaaatgaataatttcaaatacaacctgaagcattactcttaactgtatgtgtttcttcgtgttgcagaattgctcc |
7552813 |
T |
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| Q |
304 |
tgattccaccataaatcttgcagaatacgtgaagaagttttttgctagtcttccactcacaaccatcatcagtataagtttgcttcaaaatgaatatact |
403 |
Q |
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| T |
7552814 |
tgattccaccatagatcttacagaatatgtgaagaagttttttgctagtctcccactcacaatcatcatcagtataagtttgcttcaaaatgaatatact |
7552913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 1137873 - 1137980
Alignment:
| Q |
140 |
atttcagggtccatttgttactggatcttcttgcatgaaagaaggcacaattgattcactaaggtaaaatattgttcttatttcataataaagaaatgaa |
239 |
Q |
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| T |
1137873 |
atttcagggtccatatgttactggatcttcttccatcagagaagtcgcatttgactcactaaggtaaaa-attgttcttattgcataagaaagaaatgaa |
1137971 |
T |
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| Q |
240 |
taatttcaa |
248 |
Q |
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| T |
1137972 |
taaattcaa |
1137980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 388
Target Start/End: Original strand, 1138364 - 1138511
Alignment:
| Q |
244 |
ttcaaatacaacctgaagcaatactctcattc---gtgtatcttcgtgttgcagaattgctcctgattccaccataaatcttgcagaatacgtgaagaag |
340 |
Q |
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| T |
1138364 |
ttcaaatacaacctggaccaatactctaattgtatgtgtttctccatgctgcaggattgcccctgattccactgtagatttagcagaacatgtgaagaat |
1138463 |
T |
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| Q |
341 |
ttttttgctagtcttccactcacaaccatcatcagtataagtttgctt |
388 |
Q |
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| T |
1138464 |
ttttttgcccgtcttccactcacaaccatcatcggtataagtttgctt |
1138511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 1137681 - 1137745
Alignment:
| Q |
30 |
cactggttttttcaataacaaatataaaggcatttgtcatatgcttcatcttttgttttattatg |
94 |
Q |
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| T |
1137681 |
cactgggtttttcaataaaaaatataaaggcatttgtcatatgcttcatcattggtttttttatg |
1137745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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