View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6042_high_4 (Length: 399)
Name: NF6042_high_4
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 26203976 - 26203607
Alignment:
| Q |
16 |
atagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatca |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203976 |
atagctcgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatca |
26203877 |
T |
|
| Q |
116 |
gttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203876 |
gttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaag |
26203777 |
T |
|
| Q |
216 |
ttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203776 |
ttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcact |
26203677 |
T |
|
| Q |
316 |
gtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203676 |
gtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
26203607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 26223614 - 26223245
Alignment:
| Q |
16 |
atagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26223614 |
atagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcc |
26223515 |
T |
|
| Q |
116 |
gttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| || || |
|
|
| T |
26223514 |
gttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccatgagaaattttcccaagaatttctctggtag |
26223415 |
T |
|
| Q |
216 |
ttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcact |
315 |
Q |
| |
|
|||||||||||| ||||||| |||||| || |||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26223414 |
ttccatctttgatgttttcaataccatcagggagacctacctgagctgaagggaactgtataagatgagttttgatggagtatcctgaattgaagtcaca |
26223315 |
T |
|
| Q |
316 |
gtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
385 |
Q |
| |
|
||||| | ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26223314 |
gtctacagatttttggaatgtggaagcattggcatgtgtagtgatgatggtaacattaacaccatgtttg |
26223245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 26191333 - 26190978
Alignment:
| Q |
30 |
tggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatc |
129 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
26191333 |
tggagaagtaacttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccactgtccaaggatacatcatatcagtgactatacaatc |
26191234 |
T |
|
| Q |
130 |
tggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatctttgaga |
229 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| |||||||| |||||| | ||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
26191233 |
tggttgaagatctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgaga |
26191134 |
T |
|
| Q |
230 |
ttttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatcgcttttt |
329 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||| || |||||||||||||||| | ||||| |
|
|
| T |
26191133 |
ttttcaacaccatctggaagaccaacttgagctgaagggaattcaataagatgagttttgatggagtatcctaaactgaagtcactgtctatggtttttt |
26191034 |
T |
|
| Q |
330 |
ggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
385 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26191033 |
ggaatgttgaagcattggcatgtgtagtaatgatggttacattaacaccatgtttg |
26190978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 26301886 - 26301524
Alignment:
| Q |
23 |
gcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatta |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||| |||||| || | || |
|
|
| T |
26301886 |
gcacagttggagaagtagcttgagctgtaaaagtacatcctcggaatgttcagttttgaagctgattcaactgtccaaggatacagcatatcggtgacta |
26301787 |
T |
|
| Q |
123 |
tacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagct-attttaccaagaatttctgaggaagttccat |
221 |
Q |
| |
|
|||||||||||||||| |||||||||| || || ||| |||||| |||||| ||| | | ||| ||||||||||| ||||| |||||||||| |
|
|
| T |
26301786 |
tacaatctggttgaagttcttgaaacaaaacctcgattgaatcttggagcatcggtatccgacg-gctgattttaccaagtatttcaagtgaagttccat |
26301688 |
T |
|
| Q |
222 |
ctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctat |
321 |
Q |
| |
|
| |||| |||||||||||||| || |||| ||||||||||||||||||||||||||| ||||| || || | ||||||||||||||||||| |||||| |
|
|
| T |
26301687 |
cattgaagttttcaacaccatcagggagaccaacttgagctgaagggaactgaataagttgagttttaatagggtatcctgaattgaagtcatcgtctat |
26301588 |
T |
|
| Q |
322 |
cgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
385 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26301587 |
agatttttggaatgttgaagcattggcatgtgtagtgatgatggtaacattaacaccatgtttg |
26301524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 381
Target Start/End: Complemental strand, 26179157 - 26178800
Alignment:
| Q |
24 |
cacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||| | |||||| |||||||||||||| ||| |||||||| ||||| | ||||||||| | || |
|
|
| T |
26179157 |
cacaattggagaagtagcttgagctgtaataatgaattcttggaatacctagttttgcagctgcttccactgtccacggatacgacatatcagtgacaat |
26179058 |
T |
|
| Q |
124 |
acaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatct |
223 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||| ||| || ||||| |||||| | | | |||||||| || ||||| | ||| |||||||| |
|
|
| T |
26179057 |
acaatcaggttgaagatcttgaaacaaaatctcaattggattctggagcataattattgcgcgggtgattttacctagtatttcaaatgaaattccatct |
26178958 |
T |
|
| Q |
224 |
ttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatcg |
323 |
Q |
| |
|
|| | |||||||||||||| || |||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26178957 |
ttcatgttttcaacaccatcagggagacctacctgagctgaagggaactgtataagatgagttttgatggagtatcctgaattgaagtcactgtctatag |
26178858 |
T |
|
| Q |
324 |
ctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
26178857 |
atttttggaatgttgaagcattggcatgtgtagcgatgatggtaacattaacaccatg |
26178800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 24 - 385
Target Start/End: Original strand, 19103620 - 19103981
Alignment:
| Q |
24 |
cacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattat |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||| | |||||| |||||||||||||| ||| || ||||||| ||| || |||||| | ||| |
|
|
| T |
19103620 |
cacagttggagaagtagcttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgacggtccaagcatacatctgatcagtaactat |
19103719 |
T |
|
| Q |
124 |
acaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagct-attttaccaagaatttctgaggaagttccatc |
222 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | || || ||||||| ||||||| |||||| ||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
19103720 |
acaatctggtcgaagatcgtgaaacagattctcgataggatcttggagcatcaatattccact-gctgattttaccaagcatttcaagtgaagttccatc |
19103818 |
T |
|
| Q |
223 |
tttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatc |
322 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19103819 |
tttgatgttttcaacaccatctggaagaccaacttgagctgaagggaagggaataagttgagttttgatggagtatcctgaattgaagtcactgtctatg |
19103918 |
T |
|
| Q |
323 |
gctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtttg |
385 |
Q |
| |
|
| ||||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
19103919 |
gatttttggaatgtggaagcattggcatgagtagcaatgattgtaacattaacaccatgtttg |
19103981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 26128643 - 26128284
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt |
121 |
Q |
| |
|
|||||| |||||||||||||||||||||| | | | ||| | |||||| |||||||||||||| ||| || ||||||||| ||||||| || | | |
|
|
| T |
26128643 |
tgcacagttggagaagtagcttgagctgttataatgaattcttggaatacctagttttgcagctgcttcgaccgtccaaggaagcatcatatctgtcact |
26128544 |
T |
|
| Q |
122 |
atacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccat |
221 |
Q |
| |
|
|||||||| |||||||| |||||||||| | ||| || ||||||||||||| |||||| | | |||||||||| |||||||| |||||||||| |
|
|
| T |
26128543 |
atacaatcaggttgaaggtcttgaaacaaagcctcagttggatcttgaagcattgatattccaaggccgattttaccaataatttctgttgaagttccat |
26128444 |
T |
|
| Q |
222 |
ctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctat |
321 |
Q |
| |
|
|||| | |||||||||||||| || |||| ||||||||||||||||||||||||||| ||||| || |||||||||||| || || |||||||||||| |
|
|
| T |
26128443 |
ctttcatgttttcaacaccatcagggagaccaacttgagctgaagggaactgaataagttgagttttaatggagtatcctaaactggtgtcactgtctat |
26128344 |
T |
|
| Q |
322 |
cgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26128343 |
ggctttttggaatgttgaggcattagcatgtgtagtgatgatggtaacattaacaccatg |
26128284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 26250922 - 26250559
Alignment:
| Q |
21 |
ttgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttat |
120 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||| || | |
|
|
| T |
26250922 |
ttgcacattcggagaagtagcttgagctgcaaaagtaaatccttggaatgtttagttttgcagctgattctacagtccaaggatacttcatatctgtcac |
26250823 |
T |
|
| Q |
121 |
tatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttcca |
220 |
Q |
| |
|
|||||||||||||||||| |||||||| | || |||||| |||| |||||| || ||| ||| | ||||| ||| ||||| |||||| || |
|
|
| T |
26250822 |
tatacaatctggttgaagttcttgaaataaaacttcaatagaatctctgagcatccatactccacgagtgactttactaagcatttcacgggaagtagca |
26250723 |
T |
|
| Q |
221 |
tcttt-gagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtct |
319 |
Q |
| |
|
|| || ||| ||||||||||| || || |||| ||||||||||||||| ||||||| ||| ||||| ||||||||||||||| || ||| |||||| ||| |
|
|
| T |
26250722 |
tcgttcgag-ttttcaacaccgtcaggtagaccaacttgagctgaaggaaactgaagaagttgagttttgatggagtatcctaaactgatgtcactatct |
26250624 |
T |
|
| Q |
320 |
atcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgttt |
384 |
Q |
| |
|
|| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26250623 |
atggatttttggaaccttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgttt |
26250559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 26155278 - 26154920
Alignment:
| Q |
23 |
gcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||| | |||||| |||| ||||||||| ||| || ||||||||| | ||||||| || | || |
|
|
| T |
26155278 |
gcacaattggagaagtagcttgagctgtaataatgaattcttggaatacctagtcttgcagctgcttcgaccgtccaaggaaacatcatatctgtcacta |
26155179 |
T |
|
| Q |
123 |
tacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatc |
222 |
Q |
| |
|
||||||| |||||||| |||||||||| | ||||| ||||||| ||||| |||||| | | |||||||| || ||||| | ||||||||||| |
|
|
| T |
26155178 |
tacaatcaggttgaaggtcttgaaacaaagcctcaatcggatcttggagcatggatattccaaggccgattttacctagtatttcaaatgaagttccatc |
26155079 |
T |
|
| Q |
223 |
tttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatc |
322 |
Q |
| |
|
||| | |||||||||||||| || |||| |||||||||||||||||||| |||||||| || ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26155078 |
tttcatgttttcaacaccatcagggagaccaacttgagctgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatg |
26154979 |
T |
|
| Q |
323 |
gctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26154978 |
gatttttggaatgttgaagcattagcatgcgtagtgatgatggtcacattaacaccatg |
26154920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 191 - 381
Target Start/End: Complemental strand, 26082637 - 26082447
Alignment:
| Q |
191 |
attttaccaagaatttctgaggaagttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttga |
290 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| |||||||||||||| || |||| || |||| ||| |||||||||||||| ||||| |||| |
|
|
| T |
26082637 |
attttactaataatttctgttgaagttccatctttgaggttttcaacaccatcagggagacctacctgagatgacgggaactgaataagctgagttttga |
26082538 |
T |
|
| Q |
291 |
tggagtatcctgaattgaagtcactgtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26082537 |
tggagtatcctgaattgaagtcactgtcaatggctttttgaaatgttgaagcattggcatgtgtagtgatgatggtaacattaacaccatg |
26082447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 191 - 381
Target Start/End: Complemental strand, 26106424 - 26106234
Alignment:
| Q |
191 |
attttaccaagaatttctgaggaagttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttga |
290 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| |||||||||||||| || |||| || |||| ||| |||||||||||||| ||||| |||| |
|
|
| T |
26106424 |
attttactaataatttctgttgaagttccatctttgaggttttcaacaccatcagggagacctacctgagatgacgggaactgaataagctgagttttga |
26106325 |
T |
|
| Q |
291 |
tggagtatcctgaattgaagtcactgtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26106324 |
tggagtatcctgaattgaagtcactgtcaatggctttttgaaatgttgaagcattggcatgtgtagtgatgatggtaacattaacaccatg |
26106234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 31 - 381
Target Start/End: Complemental strand, 26242464 - 26242114
Alignment:
| Q |
31 |
ggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatct |
130 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||| || ||||||||||| |||||||||| | |||||||||| |
|
|
| T |
26242464 |
ggagaagtagcttgagctgcaaaagtgaatccttggaatatttagttttgcagctgattccacagtccaaggatacatcatatcagtgactatacaatct |
26242365 |
T |
|
| Q |
131 |
ggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatctttgagat |
230 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||| || ||| ||| | ||||| ||| |||||| ||||| |||| || | | |
|
|
| T |
26242364 |
ggttgaagatctttaaacagaacttcaaaagaatctttgagcatccatactccacgagtgactttactaagcatttctcgtgaagtggcatcgttcatgt |
26242265 |
T |
|
| Q |
231 |
tttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatcgctttttg |
330 |
Q |
| |
|
|||||| ||| || || |||| ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| || ||| ||||| ||||| | |||||| |
|
|
| T |
26242264 |
tttcaataccttcagggagaccaacttgagcagaagggaactgaagaagttgagttttgatggagtatcctaaactgacatcactatctatggatttttg |
26242165 |
T |
|
| Q |
331 |
gaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||| |||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
26242164 |
gaaccttgaagcattggcatgtgtaagtatgatggtaacattaacaccatg |
26242114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 26259962 - 26259721
Alignment:
| Q |
35 |
aagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggtt |
134 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||| |||||||| | ||| ||||| |||| |
|
|
| T |
26259962 |
aagtagcttgagctgtaatagtagatccttggaacaccgagtttcgctgctgattcaactgtccaaggatagaacatatcagagactatgcaatcaggtt |
26259863 |
T |
|
| Q |
135 |
gaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatctttgagattttc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
26259862 |
gaagatcttgaaacagaatttcaatttgatcttgaagcaatgaaattccatgaccgattttaccaagcatttctaaggaagttccatctttgatgttttc |
26259763 |
T |
|
| Q |
235 |
aacaccatctggaagacaaacttgagctgaagggaactgaat |
276 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
26259762 |
gacaccttctggaagaccaacttgtgctgaagggaattgaat |
26259721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 26297522 - 26297162
Alignment:
| Q |
21 |
ttgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttat |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||| || ||||||| || | |
|
|
| T |
26297522 |
ttgcacaataggagaagtagcttgagctgtaaaagtcaatccttggaatgtttagttttgcagctgattccacagtccaagggtatttcatatctgtcac |
26297423 |
T |
|
| Q |
121 |
tatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttcca |
220 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| |||||| | || |||||| ||| ||| | |||||| |||| ||||| ||||| || |
|
|
| T |
26297422 |
tatacaatctggttgaagttctttaaatagaacttcaatagattgctggagcatccttactccaatcgtgattttaacaagcatttcaagtgaagtggca |
26297323 |
T |
|
| Q |
221 |
tctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtcta |
320 |
Q |
| |
|
|| | ||||||| ||| ||||| |||| ||||| | || ||||||||||| ||| | ||| ||||||||||||||| || ||| |||||| |||| |
|
|
| T |
26297322 |
tcgatcgtgttttcaataccctctgggagaccaacttcatttgcagggaactgaagaagtttagttttgatggagtatcctaaactgatgtcactatcta |
26297223 |
T |
|
| Q |
321 |
tcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
| | ||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
26297222 |
tggatttttggaaccttgaagcattggcatgtgtagtgatgatggttacatcaacaccatg |
26297162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 26207511 - 26207152
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt |
121 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||| |||||||| ||||| |||||| | | | |
|
|
| T |
26207511 |
tgcacaacttgagaagtagcttgagctgtaatagtaaagccttggaatgccgagttttgcagctgattccactgtccatggatataacatatctgagact |
26207412 |
T |
|
| Q |
122 |
atacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccat |
221 |
Q |
| |
|
|||||||||||||| ||||| | |||| ||| ||||||||||| || | || ||||| | ||||||||||| ||||| |||||| ||| |
|
|
| T |
26207411 |
atacaatctggttggagatcacggaacaaaatctcaatttgatcatggatgttcgcaattccaagcatgattttaccaagcatttcacgggaagtggcat |
26207312 |
T |
|
| Q |
222 |
ctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctat |
321 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| ||| |||||| ||||| | | ||| |||||||| ||||| ||| ||||| |||| || |
|
|
| T |
26207311 |
ctttgatgttttcaacaccatctgggagacctacttgggctccagggaattgaatcacacaagttttgatggaatatccagaaaacaagtcgttgtcgat |
26207212 |
T |
|
| Q |
322 |
cgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||| | ||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26207211 |
ggctttcttgaataacaaggcatttgcttgtgtagtgatgatggtaacattaacaccatg |
26207152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 26227046 - 26226792
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt |
121 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||| || |||||| ||||||||||||||| |||||||||||| | |||||| | | | |
|
|
| T |
26227046 |
tgcacaacttgagaagtagcttgagctgtaatagtaaagcctaggaatgccgcgttttgcagctgattgcactgtccaaggaaataacatatctgagact |
26226947 |
T |
|
| Q |
122 |
atacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccat |
221 |
Q |
| |
|
||||||||| |||| ||||| || |||| ||| |||||||||||||| | | || ||||| | ||||||||||| ||||| |||||| ||| |
|
|
| T |
26226946 |
atacaatcttgttggagatcatggaacaaaatctcaatttgatcttggatcttcgcaattccaagcatgattttaccaagcatttcacgggaagtggcat |
26226847 |
T |
|
| Q |
222 |
ctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaat |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||| |||||| ||||| |
|
|
| T |
26226846 |
ctttgatgttttcaacaccatctggaagaccaacttgggctgcagggaattgaat |
26226792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 354
Target Start/End: Complemental strand, 26240173 - 26240031
Alignment:
| Q |
212 |
gaagttccatctttgagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagt |
311 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || |||| ||||| || ||||||||| |||| ||| || || || || | |||| |||||||||||| |
|
|
| T |
26240173 |
gaagttccatctttcatgttttcaacaccatcagggagaccaacttaagttgaagggaattgaagaagttgggttttaatagggtatgctgaattgaagt |
26240074 |
T |
|
| Q |
312 |
cactgtctatcgctttttggaaggttgaagcattagcatgtgt |
354 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
26240073 |
cactctctatggctttttggaatgttgaagcattgacatgtgt |
26240031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 26087857 - 26087776
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaagga |
103 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||| | |||||| |||||||||||||| ||| || ||||||||| |
|
|
| T |
26087857 |
tgcacagttggagaagtagcttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgaccgtccaagga |
26087776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 26111645 - 26111564
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaagga |
103 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||| | |||||| |||||||||||||| ||| || ||||||||| |
|
|
| T |
26111645 |
tgcacagttggagaagtagcttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgaccgtccaagga |
26111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 26226727 - 26226687
Alignment:
| Q |
341 |
gcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
26226727 |
gcatttgcttgtgtagtgatgatggtaacatcaacaccatg |
26226687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 26259656 - 26259616
Alignment:
| Q |
341 |
gcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
26259656 |
gcattggcatgtgtagtgataatggtaacattaataccatg |
26259616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 44903326 - 44902958
Alignment:
| Q |
22 |
tgcacaattggagaagtagcttgagctgtaaaagtaaatccctggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| || |||||| ||||||||||||||||||| || ||||||||| |||||||||||| | |
|
|
| T |
44903326 |
tgcacaattggagaagtagcttgagctgtaataataaagcctaggaatgcttagttttgcagctgattccacagtccaaggaatcatcatatcagttact |
44903227 |
T |
|
| Q |
122 |
atacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||| ||||| | ||||| ||| ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
44903226 |
atacaatctggttgaagatcttgaaacattacctcaataggatctctgagcattaacattccatgactgattttaccaagcatttctggggatgttccat |
44903127 |
T |
|
| Q |
222 |
cttt---------gagattttcaacaccatctggaagacaaacttgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtc |
312 |
Q |
| |
|
|||| || |||||||| ||||| ||||||| |||||| | |||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
44903126 |
ctttaacatctttgacattttcaattccatcaggaagaccaacttgggatgaagggaactgaataagctgagttttgatagagtatcctgaattgaagtc |
44903027 |
T |
|
| Q |
313 |
actgtctatcgctttttggaaggttgaagcattagcatgtgtagtgatgatggtaacattaacaccatg |
381 |
Q |
| |
|
||||||||| | || |||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44903026 |
actgtctatggattcttggaaagttgaagcgttggcatgtgtagtgatgatggtaacattaacaccatg |
44902958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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