View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_high_5 (Length: 384)
Name: NF6042_high_5
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 50910137 - 50909772
Alignment:
| Q |
1 |
tatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaagggaaaggaacctggaagaa |
100 |
Q |
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| T |
50910137 |
tatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaagggaaaggaacctggaagaa |
50910038 |
T |
|
| Q |
101 |
ctggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaacactatgtttttctaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50910037 |
ctggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaacactatgtttttctaact |
50909938 |
T |
|
| Q |
201 |
cttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtag |
300 |
Q |
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| T |
50909937 |
cttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtag |
50909838 |
T |
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| Q |
301 |
ccatattttcaaatttactcacactttagcaagaccttgcgtagcgtaggtgtacttttgtttatg |
366 |
Q |
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| T |
50909837 |
ccatattttcaaatttactcacactttagcaagagcttgcgtagcgtaggtgtacttttgtttatg |
50909772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 50901143 - 50901041
Alignment:
| Q |
83 |
gaaaggaacctggaagaactggctcc-tgttccagcaacaattaagtattagccatcccaaagcagta---aagacgcgtctaatagattaatacttgtt |
178 |
Q |
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| T |
50901143 |
gaaagcaacctggaagaaccggctccctgttccaccaacaattaagtattagccatcccaaagcagtaaagaagacacatctaatagattaatacttggt |
50901044 |
T |
|
| Q |
179 |
gga |
181 |
Q |
| |
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||| |
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| T |
50901043 |
gga |
50901041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
| Q |
221 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
320 |
Q |
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||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
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| T |
43548637 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
43548538 |
T |
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| Q |
321 |
aca |
323 |
Q |
| |
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||| |
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| T |
43548537 |
aca |
43548535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 29368852 - 29368771
Alignment:
| Q |
241 |
attacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcaca |
323 |
Q |
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| T |
29368852 |
attacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcaca |
29368771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 43548893 - 43548853
Alignment:
| Q |
33 |
gcacagacagcgaatatcttgtcatctttctcgccctgaac |
73 |
Q |
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| T |
43548893 |
gcacagacagcaattatcttgtcatctttctcgccctgaac |
43548853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 50910151 - 50910112
Alignment:
| Q |
33 |
gcacagacagcgaatatcttgtcatctttctcgccctgaa |
72 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| |
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| T |
50910151 |
gcacagacagcgaatatcttgtcgtctttcttgccctgaa |
50910112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 50901303 - 50901265
Alignment:
| Q |
33 |
gcacagacagcgaatatcttgtcatctttctcgccctga |
71 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |
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| T |
50901303 |
gcacagacagcaattatcttgtcatctttctcgccctga |
50901265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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