View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_high_6 (Length: 313)
Name: NF6042_high_6
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 45103216 - 45103497
Alignment:
| Q |
18 |
attcctaccaataccatgtctcatctcaatcggacctcaagtcacctgacccacattgtatacgggccacatattgggccgacctaatgtttggcaatac |
117 |
Q |
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| T |
45103216 |
attcctaccaataccatgtctcatctcaatcggacctcaagtcacctgacccacattgtatacgggccacatattggggcgacctaatgtttggcaatac |
45103315 |
T |
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| Q |
118 |
ggtccacaattacaataattgnnnnnnnnnnnnnn-gttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgca |
216 |
Q |
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| T |
45103316 |
ggtccacaattacaataattgtttttttttttttttgttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgca |
45103415 |
T |
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| Q |
217 |
tttatatatatcagttgaaagtaattaatattggatcgtatttcacgattctttgtctgttctttcttctcccttatccccc |
298 |
Q |
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| T |
45103416 |
tttatatatatcagtcgaaagtaattaatattggatcgtatttcacgattctttgtctgttctttcttctcccttatccccc |
45103497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 45130034 - 45130132
Alignment:
| Q |
157 |
acaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatattggatcgt |
255 |
Q |
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| T |
45130034 |
acaagttatcacaataattgttgtaaaataaaataaaaatgtccattatgatacattgcatttatatatagcagtcgaaagtaattaatgttcgatcgt |
45130132 |
T |
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