View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_high_7 (Length: 299)
Name: NF6042_high_7
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 43489417 - 43489124
Alignment:
| Q |
1 |
cacattcacctaataaatcttcttgaaaaatctagcaattaagttcacgatcattgaaaactgacatttgcatttctaacatccacacatctcacattct |
100 |
Q |
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| T |
43489417 |
cacattcacctcataaatcttcttgaaaaatctagcaattaagttcacgatcattgaaaactgacatttgcatttctaacatccacacatctcacattct |
43489318 |
T |
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| Q |
101 |
tagtagcaaaacacaactattataaataagattgttcctcctagctagtttcttcaatattcataacacatttatcatat--tcttactaacaaatacaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43489317 |
tagtagcaaaacacaactattataaataagattgttcctcctagctagtttcttcaatattcataacacatttatcatattctcttactaacaaatacaa |
43489218 |
T |
|
| Q |
199 |
ctattatggcacctcatggagattcattacctagctcaatctctaggaccaacaacattgtatgctccaaaccaccaaaacctaattcatctca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489217 |
ctattatggcacctcatggagattcattacctagctcaatctctaggagcaacaacattgtatgctccaaaccaccaaaacctaattcatctca |
43489124 |
T |
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